Linkage Group 01 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z164 1 TTGCTGTGTGTGTTTCTCAGTG 22 TGTTCCATCGCTGAGAAGTG 20 NA NA NA NA - -
Z450 1 AAGTACAGCATTGTCCACAGTCA 23 CAGGGAAACTGCTGATGTTG 20 148 - 132 170 - -
Z728 1 GTGGTCATGTGACACAGGATG 21 GCTCTTACAGTCCTGAGAACAGC 23 204 - 202 - - G40533
Z1142 1 CTTCACAGATTATATCCTACAA 22 GTTTAGCGGCTTTTGCATCTG 21 NA NA NA NA - G41327
Z1154 1 TCATGATTGTTTGGAATGTAATAGTG 26 TTGAGCGGTAGTCTTCTACGC 21 130 - 138 202 - G41330
Z1173 1 CAACAGTGATCACACCGACC 20 CTGCCCTTCTCTGAATCAGG 20 105 - 107 115 - G41332
Z1351 1 GGTTAGTGATCAGTTAAGCAATTAGTG 27 CTTTCTGAAACAGGGCCAAG 20 138 164 222 - - G41356
Z1368 1 TTCTGCATGTGCGAGCAT 18 AGCTGCATCTTGTGTCTAGCTG 22 99 103 97 - - -
Z1463 1 GTGAGGTCATCCAAATAAATCTCC 24 GCATTCAACCCCTGCATC 18 NA NA NA NA - G41380
Z1705 1 CCACAGCGGACACTTTGAACC 21 CAAGGTTTACCACGGGACTGA 21 NA NA NA NA - -
Z1781 1 GCTCTGGCAGATTCCAAATTCC 22 AAGGGTCAGCTGCAGGGGT 19 NA NA NA NA - -
Z1986 1 GCTGCAGCGCTGGTCACCAT 20 GCTGTGGCGACCCTGGATTA 20 NA NA NA NA - G40145
Z3099 1 TTCTCCCGGAGTTTACATGCTG 22 TTTGGTTCCTGTCAGATGCCA 21 NA NA NA NA - -
Z3417 1 TGAAAATAGGGTGCGTCTCCTT 22 GCGCACATCCATTTCTCGTG 20 134 - 116 132 - -
Z3705 1 TTGTGATTTTTGGGCTTAGGGG 22 TGTGCACCGTACTGTTTTTGGA 22 NA NA NA NA - -
Z3766 1 ACGCCTGCATCTGATGGTCA 20 TCCATGCACAAAATCTCTTGCA 22 168 - 174 - - G41463
Z3837 1 TGACTGCTGGAGCACAGATGC 21 GCATTTCTGAACAGCCCTCC 20 NA NA NA NA Use at your own risk -
Z3953 1 ATGCACATTACAACCTCGAGG 21 ATGTGTTCGCTATTTCCATGC 21 NA NA NA NA - G41474
Z4593 1 GCGGTCAGTTGTTGATCAGTGC 22 CGTGCATGAAGCGGAAGATG 20 NA NA NA NA - G41527
Z4764 1 CCCCTAACTGTTGACCGGTA 20 AAGAGTGAGTCTGGGTCTCCTG 22 NA NA NA NA - G40375
Z5024 1 TGCCGTTCAGGGACTTCAAA 20 ATCTGGTGGCTGCCAAATAACA 22 150 - 144 - - G40379
Z5058 1 CTGACGAGAACGGTGAACATGC 22 GCTCAGGGTTTGGAGGATGTG 21 185 - 177 195 - G40380
Z5370 1 GCCATCCAGAGCCAGAGATACA 22 ATACTGACCAGCGGGAAACTCC 22 NA NA NA NA - G40386
Z5500 1 TTTTGTGGATGTCCTCGGCC 20 ACTCGCCTGCATGAAGCAGA 20 NA NA NA NA Use at your own risk -
Z5508 1 TAGCGTGCCATGCGTTTTTG 20 GATGTTCCTGCCTTATCGGCC 21 NA NA NA NA - G41585
Z6177 1 ATCACTGCAGGAGGCACAG 19 TATGGCCCACGATAATCAAT 20 163 - 157 - - G41799
Z6223 1 TCAGGTGACTGACAGCAAAG 20 TGGTGAACATGGTCCCATC 19 207 - 219 231 - G41107
Z6283 1 TCAACACGCTTTATAGGGGG 20 TTGTGACGCCTCTGACTGTC 20 NA NA NA NA - G39563
Z6368 1 TGTCCTATAGCCTCGCACG 19 CCGTGATCAATCATCTGCAC 20 188 - 154 - - G40427
Z6384 1 GTGCTTCCTCCTCAGTGTTTG 21 CGGTCGCTGATCTGATGTTA 20 152 - 124 140 - G40429
Z6403 1 TGCTCAAGGACTGATTTTATGG 22 TGGTTGATACAGGTGGCAGA 20 236 - 230 284 - G41116
Z6411 1 TGAGAACACATTGCTACGACG 21 ACCCCCAGAGGCATAACAG 19 274 - 258 290 - G40432
Z6415 1 TTGTTAGATCACCCTGTTGTCG 22 CAGACGGTTAAAAGCCAAGC 20 187 - 241 339 - G41117
Z6416 1 TCCCACTTCCTCCTGCAG 18 TTTGATCTGTTCATCCTGATGC 22 137 - 167 - - G40434
Z6422 1 GCATGGTCATGATGGCTTC 19 GGTATCCAGCATGTGACAGTG 21 165 - 163 175 - G41614
Z6592 1 CTGTTTTACACACGTGGCTCA 21 TCTATCTAACACACGGCAGGG 21 173 - 143 159 - G40454
Z6643 1 GCACAGTTGTCAATGTTGTGG 21 CTCAACACAGCGTAAACGTCA 21 221 ? 211 - - G40459
Z6775 1 AGCGTATGGAGCGGTGAG 18 CAGTTCACCCATGACCGTC 19 217 - 273 311 - G40467
Z6776 1 GCCAAAGAGAGGCTCATCAC 20 TCTGGCAGATTCCAAATTCC 20 117 - 115 119 - G40468
Z6802 1 AGACTGAAGTGCACTGTTGTCC 22 CTCCGACGCGATCATATTAA 20 233 - 241 - - G41621
Z6911 1 TGTGACGGGAACAAGTGAGA 20 GTTTATGGCCATGCACGAG 19 ? - ? n - G41625
Z6974 1 AGAACTGGTTCAAGTCAGAGCC 22 TTTAGGGGCCCAGTAGTGTG 20 ? - ? ? - G40488
Z7141 1 TGGAGTCTAATGACTGCTTGTG 22 TGGCCATCTTTGTTTTGACA 20 235 - 183 219 - G40510
Z7287 1 TAATTGAGCCTCACCCGC 18 TGTGACAATACACTCGCTGATG 22 227 - 235 243 - G41145
Z7353 1 GGTGGAGCGGTGATTTATGT 20 TTCTGTGGAAGAGTGTTGACTGA 23 193 - 235 - - G40547
Z7476 1 TGGAGAACAAGGCAAGCC 18 ATTCCAATGTCTTTTTAAGCGA 22 139 - 137 141 - G41149
Z7573 1 TGTTGCACCATATTGTGGCT 20 TCCTGGCGATGAAAGAGC 18 204 - 198 210 - G40574
Z7928 1 TTGTTCCTCCAGACATTCCC 20 ATACACGCTGACCAAATGCA 20 269 - 201 n - G40611
Z8613 1 CATGTGAACCACTCGTAACCA 21 AAGACATGATTACCCGCTGG 20 120 - 136 - - G40671
Z8678 1 TGAACAAATGGTCGCATGTT 20 ACTTTTCCATCTGCTGCTCC 20 205 - 201 203 - G40673
Z8718 1 ACATGAGCAGTTGGAGTGCA 20 CTGAAGGACAAAGCCCAGAC 20 164 - 156 158 - G40681
Z8874 1 TGTGTCATCTGCTTTTGTCTGA 22 ACTGCTGTGAAGTCCACACG 20 97 - 99 - - G41688
Z9042 1 TGGAGCAGGAATTTAATGCC 20 TCTCCTGATACAGGGCTGCT 20 NA NA NA NA - G40716
Z9125 1 CCCCACATCCTAACAGGAGA 20 GTCGTTCAGATGAGAGCTTTTG 22 168 - 186 206 - G40733
Z9158 1 TAGATCTCTCGCTCCACCGT 20 TGCCGCATGACTGTACTGTA 20 238 256 228 244 - G40739
Z9217 1 GCCCAGCCCTCTGTACATTA 20 AGGAGAATCGCCATTTCTTG 20 143 165 157 163 - G41634
Z9250 1 TTCTTTCCAAACTGCAACCC 20 GCGAGAGACCCAGATCTATCC 21 211 - 209 215 - G40756
Z9294 1 TAGTGCACACCAAAAGGCTG 20 ATCCATGTTTACAGCCTTGAGA 22 123 - 127 133 - G40765
Z9367 1 CTGAGGTCGGTTATTTAGGCC 21 CATTGCTTTGCCCTCAGAAT 20 150 - 144 146 - G40778
Z9382 1 GTAAGTGTGTGTGCGCACCT 20 TCTGACTACTGAACCATCAGCG 22 138 146 154 - - G40782
Z9394 1 GGCCTCACACAATTTCAAAT 20 GAGACGAGCAGAAGTCCCTG 20 237 277 245 273 - G41181
Z9395 1 ACGATGGTGTAGAACCACTGC 21 TCACCCTCCTACCTGTCCAC 20 258 - 262 264 - G41182
Z9409 1 CACAGACACTGAGGACGTTCA 21 CGTATTAACACGGATGTGCG 20 184 - 180 202 - G41649
Z9704 1 CACGATGGCACAAAAATCTG 20 AAATCTTGGATGCGTATCGG 20 ? - ? ? - G40828
Z9791 1 TCAGAAAGGTCAGGGGTCAG 20 AGAAGAGCGTCTGTCGGTGT 20 279 - 215 221 - G40839
Z9886 1 GCTCCAGATACGCGCAAC 18 CCATTGTTGCAGAACCAGG 19 ? - ? ? - G40858
Z9958 1 ACTGGGCTGCCAGGTACA 18 GCAGTACACTCTGTCTGTCCG 21 237 - 191 259 - G41658
Z9977 1 AGTGTATGGCTATGCCCCAG 20 TTGTCAGAGGACTCTGGGCT 20 197 - 189 199 - G40875
Z10124 1 GCCAGGAAACTTGCTCTCAA 20 GTGGCAGTCATCAACTGCAG 20 181 - 183 209 - G39750
Z10155 1 TGACCCACTACCCTTTCTGG 20 CCCTGGCTGTCACCTTAGAG 20 155 - 141 149 - G39755
Z10175 1 GCATTTCGTCAAGGTCATGA 20 CACAGCCAGTGAATGCTGAC 20 221 - 205 211 - G41690
Z10194 1 TTGCAGAAATTTCCACTCCC 20 GCAAGAGAGCAGCTCAGGTAA 21 206 - 146 160 - G39762
Z10246 1 ACCCTCAGCACCTCAGAGAA 20 AATGTTGAATTCCGGCTGAC 20 132 - 150 - - G41709
Z10258 1 CACACTGTAACCTGAGCCCA 20 GAACTCTGGTTCAAGGCAGC 20 251 - 259 265 - G39771
Z10315 1 TGTGCACTAACACACGCAGA 20 TGATCAACTCTCACTTGAGTTTG 23 255 - 179 - - G39779
Z10340 1 CTGCACACGGTGTGTAAACC 20 GTAATTGATTGGCGCGATTT 20 218 - 284 - - G41694
Z10551 1 ACACCAGAGAGCGTGTGATG 20 AGCAGGAACCGTCAGCTTTA 20 223 257 219 237 - G39807
Z10888 1 CAAAGGCTTTGGATTTGGAA 20 TGTTATCCCAGGAGCCAGTC 20 242 270 212 230 - G39839
Z10978 1 AAGAGTGAAAGCAGCGGAAA 20 AAGTCCCTCTCAGCAGTGGA 20 196 - 166 176 - G39853
Z11154 1 GATCGGGATTTCAAAGCAGA 20 GAGCGAAACGAAAGAAGTGC 20 258 - 262 - - G39876
Z11266 1 CAGAGCGGGAGTCTATCCTG 20 CTTGGTGTGTCCTGACCCTT 20 134 - 102 106 - G41716
Z11369 1 GGGTAATATTGCACTTAGCCAGA 23 AACAAAAACCGTCTTGCCAC 20 261 - 229 271 - G39898
Z11464 1 CGAGCATGAGGACAAAAGTG 20 TCCATGTGCTGTGACCAAGT 20 198 210 192 216 - G39916
Z11618 1 TGAGTGGGTGTAGAGGGACA 20 GATAAGGGGCCTCTTGGTTC 20 111 - 95 109 - G39935
Z11748 1 GGCTTTTTGGGTTTTAATCCA 21 GGGAAATCCTGGAGGGTCTA 20 ? - ? ? - G39953
Z11859 1 TTTCATCTGTTTGCAGGTGC 20 GACCCCAGCAATGTTGAGAT 20 194 - 198 250 - G39964
Z11913 1 TGGAGTAACTGCAGCAGTCG 20 TCGAATCAGAGTGTGAAGCG 20 ? - ? - - G41756
Z13296 1 TCTGAGTGCACCAAATGAGTG 21 AGTTGGGTCAAACCCATGTC 20 88 90 76 - - G41094
Z13333 1 CTGCTGTCTGTCACAGAGCC 20 ATGACCAAACACAGGTTCCC 20 248 - 258 - - G41759
Z13452 1 CTCTGCCAGGTGCTTTTCTC 20 GTGTTGTCAGCTGACCCTCA 20 220 - 224 n - G40024
Z13615 1 TCCGTCTCCACCTCTATTTCA 21 CCACAGGTGGTGTCACACTC 20 153 - 139 151 - G40045
Z13724 1 AGCGCATGGTGAAATAGGTC 20 TGACACCTCCATACCAGCTG 20 152 - 176 238 - G40066
Z14078 1 AAATGGCTCCATCACTGCTC 20 CCAAGACTTGGAGACCTTGA 20 ? - ? ? - G40105
Z20062 1 GCTTTAGAGAGCTCAGCGGA 20 CACACACATTTTCACGACCC 20 208 - 222 238 - G40154
Z20950 1 GGGTATTGGAAGTTGCGAAA 20 TTTCCAAACACACTTGTGCG 20 107 159 105 - - G40210
Z21260 1 GCCAGATGACCATCTCAGCT 20 TGCAGTGCTCATAGGACCTG 20 244 - 224 - - G40236
Z21375 1 GAGTCTCCACCTCACGCTTC 20 ACCACAGGTGAATGCCACA 19 200 - 198 208 - G40244
Z21408 1 AGAGGAAGTCAACAGTACATGCA 23 AGTCCACGGATGTCCTGTTT 20 299 399 269 319 - G40248
Z21548 1 CCACTCTACCCTCCTCTTGAA 21 ACCCTAGCAAGGCTGGAGAT 20 244 - 246 - - G40262
Z21576 1 GCTGCTCTAAACAGACGTGCT 21 GCCGCTTACCTCGTTTATTG 20 NA NA NA NA - G39374
Z21746 1 ATCAGAGTTACCATTGGCCC 20 GCTGCTCATCTGCTGCTGTA 20 121 - 123 125 - G40272
Z22168 1 GGACCTGAAAGAGAACAGCG 20 GTGTGCGGATTACCGAGTTT 20 299 - 277 - - G40295
Z22319 1 CGGACTAATAAGCGCTTTCG 20 CACCTGCCTCTCTCACACAA 20 244 - 232 264 - G40311
Z22347 1 GAGCAGCAGAGAGCAGGAGT 20 TTGGTGTTTGCTGTCCTCTG 20 148 - 128 130 - G40313
Z22526 1 TCTCCCTCAGGGTTCTGATG 20 GCTTACCTGCTGTCCTGGAG 20 225 - 213 - - G41747
Z22709 1 ATTTCAGACCTGTGGGAAGC 20 AACCACCAGCCTCTGAGAGA 20 NA NA NA NA - G39511
Z22986 1 TAAGGGCGGATGGTAGTTTG 20 CATAACAGCAGCCCAACAGA 20 NA NA NA NA - G39535
Z23059 1 AAGGCAGGTAAAAATGCCCT 20 CAGTGGGTGGAAAAAGGAAA 20 NA NA NA NA - G39545
LegendLinkage group 02

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Table generated Wed Oct 7 16:28:07 1998