Linkage Group 02 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z3077A 2 TTAGCATAAGCAGCAGCCCTG 21 AGCGTACAGCCGGGGTTAGA 20 NA NA NA NA - -
Z23 2 TGTAGATTAATGCTTTTCTGTGCA 24 GCATATGAAGCAGGTCTGCA 20 NA NA NA NA - -
Z46 2 GCTGTGTGTGCCTCATCTGT 20 GCAGACGCTGTACTCCATCA 20 NA NA NA NA - -
Z644 2 CACGGACAATCCAGTGTACG 20 GCAACAGTATAAGACTGTCTTGGG 24 144 - 140 146 - G40440
Z851 2 ACAGTCTTTACTCCGCAATAATCC 24 ACTGAAGAGGAGGACCAGAGC 21 NA NA NA NA - G41422
Z1159 2 CGCTAATGACTAGCGTGACG 20 ATAACCACAGTGATAAACGCA 21 140 - 130 186 - G39933
Z1241 2 TGTTCCCAGCAGTGTATAAAACC 23 TACGTGACGCAGGAAAAGC 19 NA NA NA NA - G39988
Z1406 2 CGCCCGTTGAGGATACAG 18 CACAGTTCACAAAGCGCACT 20 NA NA NA NA - G41365
Z1484 2 TAGGCGGAGGAGACCTGCAC 20 CACCCTGATCAGTGAGTGCCC 21 NA NA NA NA - G41382
Z1703 2 GCTAGCCAATGTAGTCGAAGGC 22 TTTCCAAGGGGTCAGTGAGC 20 166 170 160 NA - -
Z3430 2 AGAAACGCAAACGCCCACAT 20 TTTAAATGCAGCCCACGGCT 20 127 - 115 - - -
Z3551 2 TGTGGAAGGAGCTGTAGATGGA 22 TGGGTGGAGTTTATTCAAGCCT 22 254 - n - Use at your own risk G41450
Z3743 2 CATTGCACATGCAGCACATAAA 22 CTCATGGGGACTGAAAAATGCA 22 199 - 207 - - -
Z3754 2 TGTTTTCTTGAGCCCTGCTGG 21 CTCTCGAAAGAGCAGGTCGAGG 22 NA NA NA NA - G41462
Z4278 2 ATCCTGTCCACTGCTGCATCA 21 ACATTGCTAATGAGTGGCGCC 21 NA NA NA NA - G40357
Z4289 2 TCATTCAGTGACTCCGTCTCGC 22 ATGCAGCCCTCAGACGTTCC 20 238 - 246 - - G41496
Z4300 2 TTTGGTGCACAAATGAAGGCC 21 CAAAAAGGGCATCGGTGCAT 20 145 177 155 - - G41501
Z4349 2 GGGTAATGAAGCGTTTCTGTGG 22 CTCCGGAGATCAGCTTTGAGG 21 149 - 153 159 - G41508
Z4382 2 TCGCTGGAACCACCATGTTG 20 ATCTGAACCGTCTGACCGCC 20 NA NA NA NA - G41513
Z4469 2 TGAAGCACATTTCAGACCTGCC 22 TTACCAAAGCGCTAGCATGAAA 22 174 - 148 - - G41518
Z4585 2 TTGTCAAGTGTGGTTTCACCCA 22 TAGCTACCCGCTGCATTGGG 20 162 - 156 174 - G41524
Z4586 2 GGTCCTCCAGGAACATGGTTG 21 TCTGCTGCAGGTCAAACAGAGC 22 NA NA NA NA - G41525
Z4641 2 AGCGACTCTGATGAGCCAATCC 22 ACCTCCTGCACCTCCACGTC 20 248 - n - Use at your own risk G40368
Z4662 2 TCCTTTTCAAGGCAGTTGAGGC 22 AAGGCAGGAGGTGAGGACAGC 21 248 - 254 - - G41529
Z4733 2 CATTCCACTGTGGCTTGTGACC 22 AATTGCCAGATGGCCAGTCC 20 137 - 141 - - G41534
Z4875 2 CACTGGGGTAAGGTGACTGCG 21 TAGATATTCCCCCAAACCGCG 21 NA NA NA NA - G41544
Z5481 2 TTCTGAGCCGTAGAACCGCA 20 CACTCACACTTTCTTTTGCGCG 22 NA NA NA NA Use at your own risk G40392
Z5611 2 CGACACAACGGTGAGCTTGA 20 ATCATCCCTCATGAGCCCCA 20 NA NA NA NA Use at your own risk G41591
Z6090 2 ATTTAGTCAGAGAGCCCGAGC 21 AAATTCTGAAGGCCTAAAAGGG 22 244 - 208 222 - G41104
Z6122 2 TGTTGATCATCAGAGGCTGC 20 TAGGCCCAAATGAGTGCTG 19 99 - 121 127 - G41105
Z6123 2 AGACGAGCATCAGTGTGACG 20 CCTGACTGTGCGCTAAATCA 20 107 - 95 99 - G40405
Z6452 2 CCTTTGAATCGTCCTAACTCAC 22 CACAAATGCCGTTTGCAG 18 83 - 83 99 - G41118
Z6569 2 CTGCTAAAATGGGTTTGAAAGC 22 ACAGACAGTTTCTGGCCCC 19 203 231 193 195 - G40450
Z6617 2 ACCGATGGGAACAATAAAAGA 21 ATCGATGTATTGTGCAGTGTCC 22 146 - 136 - - G40458
Z6766 2 CTTTCCCTCCAGACTTGCTG 20 AGCACTGATTGTGCACAGATG 21 271 - 167 249 - G40466
Z6818 2 CTGATGGGAGAGATTGACAGC 21 GAGGTGTGGAGGAAACTAAACG 22 157 239 201 275 - G40471
Z6863 2 AGGTCTGATTCCTCATTTCCTG 22 CCTGGGTTGGAGTGATGATT 20 ? - ? - - G40478
Z6985 2 CAGCATGGTTTGGGTAACCT 20 TGCATGCCAAACACAATTTT 20 ? - ? - - G41135
Z7019 2 ACAAAATGACCTCCCCAACA 20 GCCTGATGGGAAACACACTT 20 ? - ? ? - G40493
Z7227 2 AGTGGACAGCAGCGATTCTT 20 TGGTTTGATAGGCAACATGTG 21 206 - 184 - - G40522
Z7358 2 ACGTTAACACCGATAACGGC 20 CGAATGATGCATTTCATTCC 20 260 - 248 256 - G40549
Z7361 2 TTCCTTCTTCCTGTTGCGTT 20 TCTTGAAGGTTTGATTGGCC 20 135 155 151 - - G40550
Z7632 2 CTCTCTTAATGGAAGAGCAGCC 22 CAAGCCAGTCTGATGGAACA 20 218 310 208 238 - G41152
Z7634 2 ATTGAGGAAGTGGGTGCAAC 20 TCACTTTCCCACCCTTCTTG 20 197 - 169 257 - G41666
Z7678 2 CAGACTGACAGATACACGCACA 22 CGAGTGCTGCGTAGACTTACA 21 274 - 172 - - G41156
Z7841 2 GCGTTGCTGAAAATGATTGA 20 CACAACAACTCATCCTGCAAA 21 150 - 154 160 - G40600
Z8110 2 TGATGAAGGAGGAATGGCAC 20 ACTCAGAGGAAACAGGCGAA 20 136 - 132 - - G40623
Z8407 2 CATCCTGCAGTCTGAACATCA 21 AGACCAAACCCACTGGTGAG 20 134 - 194 204 - G40645
Z8448 2 ATGTGGGTAAGACTGGCAGG 20 AACCCATGCATCTGAAGAGG 20 153 167 175 - - G41676
Z8451 2 TTGCAACTTAGCGGACTGAA 20 GGCACGTGTCCATTGTGTAG 20 184 194 240 290 - G40650
Z8517 2 CACAAAAAGGAACGGTGTCA 20 TGGCATAAACTTTGAGATGGC 21 226 250 202 262 - G40662
Z9037 2 AGAGAGAGTTCTGGAGGACCG 21 TCGGTGTGGTCAAGAGAGC 19 145 - 137 155 - G40715
Z9234 2 AGGACGCAGGAAGCGTTG 18 TTTGCAGACTGAGAGGTGACC 21 310 - 284 336 - G40752
Z9354 2 ATTGGTTTGCCCTTGAACAG 20 TGCCTCATCAGCTGTAAGCT 20 235 - 229 - - G41646
Z9361 2 GCTGAGCACTTTCAACACCA 20 TGCTGGACAAGATTCTTTGG 20 217 249 187 201 - G40775
Z9615 2 GACGGAGCTTGTAGTGGAGC 20 TTTGGAGTTGGCGAGTCTCT 20 305 - 299 - - G41653
Z9944 2 TGGATCACTTGCGATAACCA 20 AATCCCTATACGGCACCTCA 20 221 - 237 245 - G41193
Z10021 2 TCACAGCATCAGGACTCTGG 20 GGATTCCATCAGGACCAATG 20 259 - 227 ? - G39740
Z10050 2 CATTGATCGCGTTTGATTTG 20 CCGAGCAGAAATGAGCATCT 20 ? - ? - - G39743
Z10302 2 AGTGGACCAAATTGCAGACC 20 GGGTCCATTCAGGTGTCTGT 20 112 - 124 ? - G39776
Z10764 2 TCCTTTTCTCGCTCTCTCGA 20 GGTCACGAAAAGGAAACCAA 20 187 - 177 211 - G41706
Z10838 2 TGGGCATTTGGATGTAACAA 20 CCCCTAAATTGGCACTTATGA 21 216 - 206 220 - G39836
Z11023 2 CAGTGCTGCTTCGTGGTAAA 20 TGCAGTGCTGTAATTGAGGG 20 NA NA NA NA - G38996
Z11066 2 TGGGTCAGTGTTACTGCAGC 20 GAGAGGGTGCAGTTTTGCTC 20 102 - 108 116 - G39864
Z11132 2 TAGCTAGACGGACGGAAACG 20 CCTCAGCAAGTCAATGCAAA 20 234 - 238 - - G39874
Z11354 2 GATAAAGGACAGGCCAACGA 20 AAAACACCCTTCACCACAGC 20 ? - ? ? - G39896
Z11410 2 TGCAGATTTCTCTGACATTCTCA 23 AGAGAGCATCATTCAGCGGT 20 88 - 84 92 - G41717
Z11415 2 GCTCTATGAGGCGTCCTTTG 20 CTCCAGTCTTTTCAGCAGGG 20 133 - 169 - - G41718
Z11863 2 TGATACCTGTCAGCGAGTGG 20 CTGAGCAAAACACTGTCCACA 21 239 - 153 - - G39966
Z13281 2 TCAATATTGCACTGACCCACA 21 CATGCTCAAACACGCTCACT 20 149 203 99 159 - G41602
Z13361 2 ACTCGGTCCTGATGGATGAC 20 CAGTAAATAATAACACAAGCATGCG 25 187 - 127 - - G40013
Z13475 2 CTCTTCTCCCAGTGTGGAGC 20 CCAGCCTGCAGATCTTTTTA 20 184 - 184 204 - G40027
Z13521 2 CATTGTCACACACATTCCTGG 21 CGTCACAGCTCAAGCTGAAG 20 281 - 183 - - G40032
Z13579 2 CAGCAGAAGGGAGTCAAAGG 20 GGCGATTTTAAAAGGCACTG 20 187 - 261 - - G40041
Z13620 2 GCGTCCCTGCTTACACTTTC 20 AAGATGCCGGAGCATTGTAG 20 251 - 223 225 - G40046
Z13708 2 TCTCCCCTCAACAGAGCACT 20 CGTTCAGCAAATCCAGGTTT 20 278 - 240 - - G40064
Z15410 2 ACGCTCCTAAAACAGGCAGA 20 CAGACTGAGCTCCATTTCTGC 21 134 - 146 - - G41823
Z17291 2 TAGGAGTCAGTATATGCACCCG 22 AAGCTGGCACCAAACAGTG 19 257 - 245 289 - G40141
Z20550 2 CGGTGTCACTGGGAGTTTTT 20 GCGTAAACACAGTCAGCGAG 20 279 - 297 319 - G40183
Z20629 2 TGGAGGGAATGGAGAATACG 20 TTTGAGCTTGGAGGACAGCT 20 97 - 85 87 - G40190
Z20656 2 TGCTCTCGGCAACACTATTG 20 TGCTGAGAAGAACAGCCAGA 20 258 - 256 - - G41733
Z21046 2 CTGAAGTCCATGCACTTTATCAG 23 CCTTTTGGGGGAATGAAAAT 20 165 - 163 - - G40218
Z21363 2 TGCATAAACAAACTCGCAGG 20 CCCTGGGCATGGTAATTAGA 20 238 - 232 234 - G40243
Z21490 2 CCAGCCTACAAACACACCCT 20 TATTTCTTAGTGCCCGTGCC 20 222 - 158 232 - G40259
Z21831 2 GCCTTTCTTCATGCAGAACC 20 TGGGACGGATATCCTACAGG 20 226 - 228 230 - G40274
Z22147 2 GCTGATTGGCCAATTTGTTT 20 CAAGCCACAAGAGTCAGTGC 20 224 - 226 - - G40294
Z22527 2 GGTGTAGTTTGTGCCAGCCT 20 TGCTAAAGCTGTCTACGCGA 20 115 - 123 - - G40328
Z22544 2 TCATGTCCACCGTTCAGTGT 20 AATATCAGGTCATGCGCTCG 20 NA NA NA NA - G39489
Z22747 2 GAAAGCATCAGCCTCTCCAC 20 GGCAGTGAGAGGGTTCATGT 20 NA NA NA NA - G39516
Linkage group 01LegendLinkage group 03

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Table generated Wed Oct 7 16:28:07 1998