Linkage Group 03 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z419 3 ATTATCCAGCACATGACGAGG 21 TCTCGCTCCTCACCATCAC 19 100 - 104 276 - G40354
Z872 3 CTTAAAGCCCAGTGAGGCAC 20 ATGCCTGGTAATGAGCAGCT 20 236 - 228 - - G41425
Z963 3 ACTGGCACTTCACGCTCC 18 TCTCACACTGAGTGCTAAACGG 22 201 - 189 277 - G41430
Z1140 3 CGCTTCAGCCTCAATCTCTC 20 TGTAGCTTTCTGGGCCTGAT 20 187 - 259 269 - G41325
Z1183 3 CCGCGGAAGATTAATCAGAC 20 AGATTCACTCCGTGCTCCAT 20 NA NA NA NA - G41336
Z1185 3 CAGCAGGAACGAGGACGTCA 20 GGGTGGGGTTAGGGCAATAG 20 NA NA NA NA - G41337
Z1191 3 TCAGAACTCCAGCCACCAG 19 TGGATATACTTTATCCCTAACTGAACG 27 138 - 160 - - G41338
Z1209 3 CCTGAGCACATGTATGCAGTCG 22 CACAATCGCAGAGCAGCGCC 20 140 - 128 - - G39982
Z1401 3 TCCACTTCAGTCACGTCCTG 20 CACCATCACCGTCTGGAAG 19 239 - 135 - - G41362
Z3100 3 ACTCGCATCACAATGCTTGAGC 22 TCCTTTCAGCAGGACTGGGC 20 NA NA NA NA - -
Z3439 3 CTGCAGCGAATGAGCAGGAA 20 TTGTGAGCTCAGGTGGCCTG 20 213 271 155 - - -
Z3725 3 ACTAAATCGCACTTCAGCAGCG 22 GGTGTCCTCACATCAGCTGCA 21 248 262 296 - - -
Z3929 3 ACCAGGTGAAGGCATACAGG 20 ATAAATCAGGCTTTAGAAATCCG 23 111 - 127 135 - -
Z4161 3 ATCAGTCCTGTGATTCCCGTCC 22 CCTCAAGCGCCAGCGAGTAT 20 325 375 - 297 Use at your own risk G41481
Z5033 3 CACCAGGAAGAAATCGATGCG 21 GACGTTTACCCACCAAGAACCC 22 253 - 277 361 - G41551
Z5197 3 CCAATCTGCAAATGTCACCAGG 22 TGTGCACAGCCGTTCCTACA 20 251 - 171 183 - G41565
Z5623 3 GGAGAATGAATGGTGACCTTGC 22 CTTCCCACCCACAGAGAGGG 20 NA NA NA NA - G41592
Z6019 3 GCAGTGTCAATACTTGCTCTCG 22 ATCCTCTGAGAAACCAGACAGC 22 111 - 131 - - G41834
Z6068 3 TTGGAAAAATACAGCGAGTGG 21 CTCAGACTCGGTTCCTCTGG 20 124 130 130 134 - G41609
Z6566 3 CGGAGAAACAAGACGGAAAG 20 TGTATGGGATTGGGCGATAT 20 177 181 183 - - G41121
Z7293 3 TGACCCCCTACTGACGTTATG 21 CCTATGCCTTCAGACTGATGC 21 260 266 256 276 - G41146
Z7419 3 TGAAGTTCAAATCAGACGTCAG 22 GCTTTCATTGTGGTCAGGGT 20 218 282 286 308 - -
Z7486 3 CGAGCAGTTACATCACAGGC 20 CACACATGTGCAGCGTTACA 20 225 229 215 - - G40560
Z7506 3 GTCCGTCTCGCTCTCTGATC 20 CGCAATGAGTTAAACAGTGTGA 22 190 - 188 206 - G40564
Z7672 3 AAAGGCGCCTAAAAATAAAAGG 22 TCAGTGGCACAGAGCAGC 18 210 n 198 228 - G40589
Z8208 3 CTTGCTGGAGTCAGAGTCACC 21 TCAGAACTTGGCCTTGGC 18 143 179 133 137 - G40631
Z8364 3 CCAACCCTGCAGGTAACTGT 20 CAGATTCATACCTGCAGTTGTG 22 ? - ? 107 - -
Z8406 3 CAAATGTCCAGTGATTACCTGG 22 GGAAACAAGGCTTGGATAAGG 21 166 - 156 198 - G40644
Z8492 3 TCACTCACGACACCGGATTA 20 GGTGAGCAACCGAGGATTTA 20 116 - 114 138 - G40660
Z8680 3 TCAGCCCTCTCCTAAAACGA 20 TGCTACTGCCCAACACTGAA 20 256 290 264 380 - G40674
Z8681 3 CGGCAGTTCACATGTCAAAC 20 GGCGAAAAACTGACATCCAT 20 283 - 297 - - G40675
Z9011 3 AGTGCAGGACTGCAGCACTG 20 CAGCACCCATAGACCAAACA 20 159 - 137 153 - G41835
Z9016 3 CTCTGATTTGCTCTCCCTGG 20 ACTGCATAAGAAAGCAAAAGCC 22 128 132 120 130 - G41836
Z9257 3 GCTGAGGCATTCCAAATGTT 20 GCTGGACAAATCTCACAATTG 21 126 - 114 130 - -
Z9356 3 CTGCGGGACTCTGCTATTTC 20 CTTCATGTCTGAGCAGCGC 19 127 ? 111 - - G40774
Z9392 3 GCCGACAGATGTATTGCATG 20 CTCCTTTCCTGTAAGCGTGC 20 102 140 102 - - G40785
Z9408 3 CTCCAGCTCCTCCATCTCAC 20 TGCCACTGTCACATTTGGAT 20 169 - 163 173 - G41648
Z9463 3 GTTGGTGGAGGGGAGAGAAT 20 CAAAGATAAAGCAGGGGCAG 20 150 154 164 - - G41650
Z9523 3 AAACCTGTAATGGGACAGCC 20 ACTGCTTTGGCAGCTGTGC 19 ? - ? ? - G40806
Z9662 3 TCATCTCCAACAAAACACGC 20 GGGACAGACAGGGGAAGATT 20 120 - 100 - - G40820
Z9843 3 CATGCCAGGAGTGACATGAG 20 CTATCTGCACAGCTGTCCCA 20 184 200 156 164 - G40847
Z9964 3 TGGCTGTCTATGAGGTATGGC 21 GACGACAGAACACAGCAACG 20 223 229 195 283 - G40872
Z10067 3 CTATGGTGCAGCATGTGCTC 20 GAGGGAATGTGTGCTGGACT 20 246 - 230 232 - G41680
Z10538 3 CATGTGGACAGCTTGATCATT 21 AGATGAATGTGCGTGAGCAG 20 178 - 118 130 - G41700
Z10735 3 CAGGTGCTCCAGGTCTTCTC 20 GTTCACCATTGTGCATCTGC 20 196 - 182 - - G39824
Z10805 3 GCCACCTAAAGCACTTTCCA 20 CTTGTTGGCTCACTTTTGCA 20 213 - 215 255 - G39831
Z10927 3 GCAGCAGGTCAGTCAGAACA 20 TGTCATCAGCCAATCAGAGC 20 113 - 141 155 - G39844
Z10934 3 TGCATTTCTATTTCCCCCTG 20 GGCGATGTGACATTTTATTTG 21 243 287 299 339 - G39846
Z10964 3 GTCTCTCCTGATACGCCCTG 20 CTGACCTAAGGAATGATGCTGA 22 149 185 149 163 - G39852
Z11015 3 GTGCCGCTTGGTAGAGAGAG 20 AGATTTAGGGAGCTCTCGGC 20 116 156 124 150 - G39857
Z11227 3 CAGTCATTCCATACACCTGATCA 23 TCTCTTAATTGGTGCAGGGG 20 156 - 164 - - G39878
Z11244 3 CATTGGTGCAGATGGAACAG 20 GTGTGTTCCCCTCAGCTGAC 20 ? - ? ? - G39881
Z13387 3 AGTTCAGTCACCCGGTTCAC 20 TGGAGGAGGAGGCTGAGTAA 20 252 - 240 244 - G40017
Z15457 3 TCGCCCCATTATTTTATACACC 22 CTTTCTTCATTTCCTGTCACCC 22 116 118 112 200 - G41607
Z15460 3 TCATCACATTTACATCCCAGTG 22 AGAGTGAGAACCTCAGCAACG 21 - G40125
Z15479 3 GCCAAACATTCCAGCTGATT 20 AGCCGGACTCAAATGCAG 18 163 - 159 - - G40126
Z17222 3 TACATAAAGGATCATTGCACGC 22 TTTACAGTTGAAAGGGCATGC 21 241 285 281 - - G40136
Z17253 3 CACCCATGTATGCAGATCTCC 21 TCTTCAGGCCTCACCACAG 19 137 - 92 114 - -
Z20058 3 GGTGTTTCGTCCACTGTTGA 20 TAACTTTTCAAACGGGACGG 20 96 - 98 106 - G40153
Z20073 3 TGTGGGAATGTCGAAGTTGA 20 ACACCTGTGGAGGCATCAC 19 269 - 237 - - G41725
Z20317 3 GACTCTGAGAACCAGCGGAG 20 TTTCATTGATTGAGCGCTTG 20 181 201 163 - - G40167
Z20616 3 GGTGTTCATGAGCCCAAACT 20 CGGAGCTTCATCCACCATAC 20 217 - 223 - - G40188
Z20966 3 CACCCTTTCTTCTCAGGCTG 20 ATTCGGTCTGTTCTGGTGCT 20 147 - 109 113 - G40213
Z21679 3 CCTGCCCTCAAATTTGTGTT 20 GCCTTCCATGAGACCCATTA 20 211 259 201 227 - G41744
Z21827 3 GAGACAACCGGGGTCAACTA 20 CAGACAGCACAACAGGATACG 21 NA NA NA NA - G39403
Z22516 3 GTCCCGACATGCTGGTTAGT 20 TGAGGAGCTGAAATCTTTCTCA 22 157 - 155 183 - G40324
Z22555 3 CAAATCTGATCTGGGTGGCT 20 GAGGAGACCGAAACACTTGC 20 NA NA NA NA - G39491
GOF14 3 GCTCTTCAACATGACTCATTGTG 23 TTACTGGCATTGGTTAAACGG 21 166* NA NA NA "Goff, et al., 1992" none
Linkage group 02LegendLinkage group 04

If you have questions, comments or problems contact us.

Back to Index
Table generated Wed Oct 7 16:28:07 1998