Linkage Group 04 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z984 4 TTTCTCAGAGCACAACCTTTAAC 23 GAGAGCAAACTCCAGCTGCT 20 NA NA NA NA - G41850
Z1366 4 TACTTCAGCTTCATCCAGACCA 22 CTGAACTCTGAGTCCAGACCG 21 119 121 103 111 - -
Z1389 4 TTTGACAAGTGAGTGTCCGC 20 TAGGACCAGCTTCTGCCTGT 20 NA NA NA NA - G40085
Z1416 4 GGACACATGTTGAAACTCTACAGG 24 ACCTGCCCTACCCACTCC 18 130 - 126 - - G41368
Z1505 4 GAGTGCTAATCTCCGACTCGGT 22 CTCATTAGAATAAACTCTCTGAAC 24 121 - 103 115 - G41385
Z1525 4 CTTCAGCGCATGTGATCG 18 GACCTTCTCGCTGGACTGAC 20 106 - 126 162 - G41387
Z3025 4 CCCAGACCTTCTGATCCAGGC 21 CGCACTTTCATCTACAGCTCGA 22 NA NA NA NA Use at your own risk -
Z3219 4 AGCGGCTGTAGATGTCGATGC 21 CCGTGTGTGTGCACATGACC 20 NA NA NA NA - -
Z3275 4 TTATTAACACAGACAGCCGGG 21 CAGACAGATGCAGACCCTCA 20 NA NA NA NA - G40333
Z3602 4 AGCATTAGTGCATTCTGCGCA 21 TTCCGATCCCAAAATTACAGCA 22 105 107 87 129 - G40338
Z4025 4 TGTGTGCTCACTGCTGCTGG 20 CTCAGAGCGCTGGTCAACCA 20 NA NA NA NA - -
Z4951 4 TTCCTTCATGGTGGGCGAAT 20 CCTCTCGTTTGGAGCCCAGA 20 257 - 245 273 - G41546
Z5095 4 GTTGGGTTTAGGGGTAGGCTGG 22 GCGCCCCAAATGGTTTTGTA 20 NA NA NA NA - G41555
Z5112 4 CAGCGACGCTTCAGTGCTGT 20 CCGGGAGAGTGAGATGCTGG 20 NA NA NA NA - G40382
Z5167 4 GCCCTTGGAACAGTCACATTCA 22 TGCAAGCCATCACTGGGAAA 20 NA NA NA NA Use at your own risk G41558
Z6482 4 GGATGCTTCCGTCACTCTTC 20 AGACCTGCACCTGTTCCAGT 20 NA NA NA NA - -
Z6503 4 TCTGAGTCAGGCCTACCCC 19 ATCTCCAGCCAAAATACATTCA 22 320 - 300 - - G40443
Z6580 4 GGATTTCAGCGGCAGAATAA 20 GACTGCGCATTCTTCACTCA 20 136 - 114 128 - G40453
Z6596 4 GATGTCCACCTTTCCACCC 19 GGTCACAGGGTGGCAGTC 18 170 178 164 184 Use at your own risk G40455
Z6908 4 TGAGGTTACATGTCTTTGCTGG 22 ACCCCAATGGCAATGATTAA 20 NA NA NA NA - G41623
Z6977 4 TGCTAATTGGGACACTGCAA 20 AGAGTGGCACACTGGTAAAACA 22 ? ? ? ? - G41134
Z7104 4 CCTCCCTTTAGAGCCACCTG 20 GCCCATCACAAACCAGAACT 20 178 - 172 180 - G40500
Z7191 4 TTTTTGTTTCATCTCTCTCCCT 22 AGGTTTCCAAGACGGGCTAT 20 115 - 119 121 - G40515
Z7490 4 TGGTGGATGTGTTCACGACT 20 TGTAAGTCCTTCAGAAGAGGCA 22 215 249 231 245 - G41664
Z7496 4 CGCTCATTAGCATGGACAAG 20 AGACGCAAGGAGGGAAATTT 20 ? - ? ? - G40562
Z7524 4 TCTGGCAGAGCAGACACATC 20 TTGCTGTGAGGTGATTGTAACA 22 103 - 109 - - G40566
Z7629 4 CGAAACTAACACGAACACCG 20 CTTTAGCACAACACGACCGA 20 225 n 215 223 - G40582
Z7918 4 AGATGATTTGCCCTTTGTGG 20 GGCTGCATGCCATTTATTCT 20 112 132 124 144 - G40609
Z7931 4 CTCATCCTTGCTGTGGGATT 20 TTTCCACCCGCTACTGCC 18 278 288 294 - G41670
Z8184 4 ATCTGCCTGTCAAATTTCCG 20 GAAAATGAACGCGGTGAGAT 20 238 - 234 240 - G40630
Z8226 4 TCACTCACTTTCCCGCTTG 19 ACTCATGGTGTTTTCCTGGTG 22 111 - 117 n - G41165
Z9247 4 TTGACAGCTTTCAGGTGCAG 20 TGCCCATGTTCATAGCTCTG 20 118 - 110 - - G40755
Z9319 4 ATGAGGGAATGTGGCTGTTC 20 TCCGGACATGTTCTGATGAA 20 156 - 158 162 - G41177
Z9324 4 CAGCACAAAATCTGGCTTCA 20 CTCTCCACACATGTGCTCTCA 21 176 - 174 178 - G40767
Z9496 4 CGCTTGTGTTCCACAGTGAT 20 TTGTGTTCTTCTCGTGCTCG 20 280 - 294 298 - G40801
Z9590 4 TACATGAGCAGCGGCATTAC 20 GGCACTTACACACACACACTTTC 23 ? ? ? ? - G40814
Z9667 4 AGTCGAGCTGAACTTTGGGA 20 GATGCAAATAGCAATGGCCT 20 263 - 249 - - G40821
Z9750 4 GCACCAATCCGGAAAGAATA 20 AGCTTTAGAGCTCACTGCGC 20 205 225 225 309 - G40835
Z9920 4 GCTGCTGAGTTGTGGTCTTG 20 TGCCCTTAAATCATACAAAATTACA 25 148 202 184 192 - G40863
Z10066 4 CTTCCTGCTCCGCCTCCT 18 CTACCTGTCTGAACTCCGGC 20 189 - 177 199 - G39746
Z10164 4 ATTAAAACCCACACACGCAA 20 GTCCCGCTCATTGTTTGTTT 20 298 204 168 216 - G39757
Z10280 4 AATGTTCCGTACGGTTCTGC 20 CTTTTGCCCTTCTGGTTCC 19 203 - 191 197 - G39774
Z10354 4 AACACACCCTGGAGAACCAG 20 AGCACTTCCTGTCTGACCGT 20 191 - 205 229 - G39784
Z10983 4 TCAGACTCGCATACGTGAGG 20 TTGAGTGACAGCTGGGTCTG 20 168 - 144 158 - G39854
Z11250 4 TCTTTCCTCAGGCACACACA 20 GTGGAAGTGACTCTGACGCA 20 150 - 144 - - G39882
Z11538 4 GGCTTGAAGAACACAATGCA 20 GGAGCTTTAGCTGGTAATCCC 21 199 - 135 153 - G39928
Z11566 4 TCTCCTTTTGCTCTGCCATT 20 TGCACTGGCAACATTCTCTC 20 187 - 177 - - G39931
Z11657 4 GTGGCCTTTCATTTCAAACG 20 CTGGCGACAATAAAAGGCAT 20 174 - 164 178 - G39941
Z11873 4 GTTTTGGGGAAGCCTCAAAT 20 TAATCCTCCTCCCCCAGTTT 20 ? ? ? - - G39969
Z11876 4 CATCAAAGCCTCAGCACAGA 20 TGGAATAAGAGATTCCATGCC 21 160 - 162 192 - G41754
Z13274 4 TGGTTAGACCACTGTAGACCCC 22 AGCGACAACACACTCCTGC 19 218 - 200 - - G41600
Z13469 4 GAAAATAAACGAGGGCGACA 20 CTGACCGCGCTGTCAGTAG 19 168 178 164 166 - G40026
Z13546 4 ACCGCTCTTTGGTCTGAGAA 20 AATGAACTCTTTCAGACGCG 20 NA NA NA NA - G39115
Z13639 4 TGTTTCCCTGTGTCAGTCCA 20 CCTGAAATGTTCCCGAGTGT 20 112 - 104 110 - G40050
Z13652 4 CCTCCCGATCATTTCACAGT 20 GATGGAGAGGACACCCTGAA 20 287 - 283 293 - G40053
Z17278 4 TGAGCAACAGGATGTTAAATGA 22 TCGGTATTTTAGTGGCCTGG 20 166 188 178 - - G40138
Z20450 4 CCAAATCTACGCCCATGTCT 20 CGACCTCTGAATCTGCCTTT 20 275 297 261 319 - G40177
Z20533 4 TGACCCAAATGAAGCATGAA 20 CAGCTCTGTCAGCTGACTCG 20 209 227 203 239 - G40180
Z21319 4 GGGCTCTGAAGCTTTAGGCT 20 TGAGGCAGATCAGTCTGGTG 20 280 - 282 - - G40239
Z21636 4 CTCGCTCACATGAGGACTGA 20 AGTCTGATTGTGGCCGAGAG 20 159 - 152 161 - G40264
Z21686 4 GTGCACAGAAACTGCTGGAA 20 TGACTGAAAGTCTGCATGGG 20 218 - 152 192 - G40267
Z21743 4 GTTCGGTGGTCTGGACATCT 20 TTGATGCAGTTATTCTGCGG 20 151 - 149 177 - G41746
Z22525 4 TCTGTGGCCAATCTCCTCTT 20 TTATGCCAGGAAAAGAGGGA 20 297 - 291 - - G40327
Z23058 4 TTCTATACAGTGTTGCCGCG 20 GGCTCAGGAACTATTTGGCA 20 NA NA NA NA - G39544
Linkage group 03LegendLinkage group 05

If you have questions, comments or problems contact us.

Back to Index
Table generated Wed Oct 7 16:28:07 1998