Linkage Group 05 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z3763B 5 CCAATTAACGGAAGTGAACCGC 22 GCACTGGATCAGTCCCGCTT 20 190 - 180 - - -
Z13 5 CACGTGCTGATGCAGGAC 18 GATGACAGCCAATCAGAGCA 20 144 - 150 - - -
Z379 5 AGCCTTTCACTGGCCCTATT 20 CAAGGTGGAGTAAAAATCCTGC 22 260 - 252 - - -
Z647 5 GTGAGAGGTACGGCAGGAGA 20 AAACAACCCTGCATCCACTC 20 249 - 283 - - G40442
Z896 5 ACAACCACAGCATGACCTCA 20 ACAAGTGCTGCAGAAGATGTATG 23 NA NA NA NA - G40709
Z1167 5 TCCCTTTGTAACATCGGCTC 20 AAGCCCCGACTACTGTCTGA 20 179 - 171 - - G41331
Z1202 5 GTCAGGACCATACCCAGAGC 20 CAGCGACTGACGGTTCTGT 19 NA NA NA NA - G41341
Z1390 5 TGAGATTTGAAAAGAGGTTCTGC 23 GTTGTGTATGTTACTTCAGCAGTGG 25 NA NA NA NA - G40087
Z1419 5 TGGTGGACGAGGAGAAGC 18 ATCTAACAGGTGTCCGGTGG 20 NA NA NA NA - G41370
Z1454 5 TTGGAGACTAGAAGCGGGATGA 22 TTTACTGTCATCACGGCAAAGA 22 NA NA NA NA - G41376
Z1492 5 GAGCAGCCACTCAGGTGAG 19 AGATACTGCTGGAGGGCTCA 20 246 - 214 - - G41383
Z1677 5 CCGTGAGAGACGGAGATCATG 21 GACAGGTCACACGGATCAAACG 22 NA NA NA NA - G41403
Z1813 5 GGCGCTCTCTACTGGCCAAA 20 TCAGCAGGGCCAGTTCACAT 20 NA NA NA NA - -
Z1842 5 AGCACCCGGAGGAAACCAAT 20 AGCCAAACTCTCCCAACAGCC 21 196 - 198 - Use at your own risk G41434
Z3060 5 GCCAACATCCTGCAGATTTTAA 22 CAAACCTGGAGGACCAATGTCC 22 194 - 164 n - -
Z3193 5 CAAGGCATACCATGAGGGAAGG 22 TTGTCATCCGTTATGCCCTCC 21 NA NA NA NA - -
Z3334 5 AACAGGGGGCTAGCAATTCT 20 TGCACTTTTGAATGACGACA 20 144 - 150 - - G41442
Z3516 5 GCACATCAGCTCCTGTGAGAGG 22 TTCGCACATGCTAAAACACACG 22 107 - 105 - - G41448
Z3804 5 CACGTGCTCAGAGCTCCAGC 20 GTGAAGCGCGTGCACATAGG 20 NA NA NA NA - G40347
Z3863 5 ATGCAAGCATAGATCCGACACA 22 TGTCGGATCGATGCTTGCAT 20 171 - 181 191 - -
Z3902 5 GCCACCATGCCACCACATAA 20 CAGGCGAGCCTTGGAAAGAA 20 215 217 191 209 - G41472
Z4246 5 CCAGCACCTTGTTGAACCTGG 21 GCCGGATTTCCTGGAGGTCT 20 NA NA NA NA - G41489
Z4299 5 AGGAATGCGCTATGGGACGA 20 CACATCTGCCACTGAACCGG 20 308 - 202 206 - G41500
Z4348 5 GTCCCATGTTTAGCAATGCCG 21 ACACCCTCCTGAGTTCCTCCA 21 NA NA NA NA - G41507
Z4760 5 AATGTCAAGGACGCATGGCA 20 CAAAGACCCACACGAATGAACG 22 253 - 271 - - G40374
Z5208 5 CCAAGCAACTTGAAATTTGCCA 22 TGCTGTAACCACTGAGGTTGCC 22 341 351 347 359 Use at your own risk G40383
Z5260 5 CGGCGTGATGAGTGCAAAAC 20 CGGCTGTTTGTGTCAGAGTTGC 22 232 - 230 - - G40385
Z5473 5 GTCAAGACCAGCAAACCCAGTG 22 TTTGCAAACACTTGATGGGGA 21 NA NA NA NA Use at your own risk G41582
Z5538 5 TCAGCCACATTAGGGGAAAGC 22 GCCATCCATGTTGGCTGTAGG 21 NA NA NA NA - G41586
Z5552 5 AAATGCTGTGCACCGTGTATGC 22 ACCCTGGGTATTTTGAGCTGAA 22 231 - 235 - - G41587
Z6094 5 TACAGATGGGGCCAGCAT 18 ACCTCTCTGCCCTTCACAGA 20 179 - 173 - - G40402
Z6132 5 GCCATGCATATTTACATCAGG 21 ACAGGTGTCAGATCAGCAGTG 21 93 97 109 119 - G41106
Z6323 5 TTTGCACTTGAAAGGGCTTT 20 CCTTGGGTACACTTGGCATT 20 155 - 113 167 - G40422
Z6371 5 CTGCGTATACATTGAGTGGCT 21 GAGAGCGCACCTGTACTGG 19 217 - 131 - - G40428
Z6614 5 AGCGCTTAGATCAGTTTAACAG 22 GTGTGCTGGAAAGCTGTGAA 20 193 217 197 - - -
Z6727 5 TGGCCACATTTATCTCGTAGG 21 ATGTGACCACTGAGTGGGAA 20 291 ? 319 - - -
Z6803 5 CTGCTGTTGTCGGAAAAACA 20 TCACCCAAAACTGGTCATCA 20 220 - 174 228 - G41126
Z6880 5 TTGAAATGTCACCGTTGCAT 20 ATCATCAGCATGGTGCTCAA 20 145 - 125 127 - G40481
Z6916 5 TCTGTGCCTGAGTCTTGTGC 20 TCTCAGAACTGCTGAGAATGAC 22 ? - ? ? - G40483
Z6981 5 CTGTGTCCGATAAACAGCACA 21 TCACCCTCTACGTCTGTCTGC 21 275 - 301 - - G40489
Z7121 5 CTTGCCTGATTGGTTCATCC 20 CCAACTCAGGGGAGTGTTTC 20 228 - 346 - - G40504
Z7223 5 TCATGAGCCACTGGCATTTA 20 CATGACACATGTGATTGAGGG 21 202 206 146 156 - G40519
Z7226 5 GCAGGTGAAGCGCTTTATTC 20 ACAGAGTACTGAGCGCATGTG 21 241 - 233 - - G40521
Z7257 5 GGCAAAGTAATGGAGCCAAA 20 CCAAACTCTGTTTTGTGCCG 20 242 - 236 - - G40530
Z7291 5 CACTGTGACTGGGAAACACAG 21 TCAAAAACATCACCATTCGTG 21 100 138 166 - - G40534
Z7313 5 TGGGCTCTGCTCATCTCC 18 GCAGCACGAGATGCGAAT 18 157 - 117 - - G41147
Z7315 5 CGTCTGAGTTTTGCTTCTGCT 21 TTTGCATGTTTATGCCGAGA 20 257 - 247 - - G40539
Z7318 5 CTGCAGATGCATCCAAACTC 20 TGTTTGGAAAGTGGAGGAGG 20 215 - 203 - - G40540
Z7339 5 TGGAGTCCTGGTGGGTTTAA 20 GGCATAAGCAGCATGTCAAA 20 257 - 239 - - G40544
Z7351 5 CTCCGGTCCAGTTTGCTTTA 20 TCGTTTTGACATCAAGGTGC 20 225 - 235 - - G40546
Z7428 5 ATTGGGTGGTTGTGCATTCT 20 CTGTCCAATCTCGCTGTCAC 20 200 - 172 - - -
Z7685 5 AGACATCAGCATTCGGGC 18 GGGCTCCTTTTATGCTTATGG 21 205 - 183 - - G40590
Z7824 5 CTGGTCCTGAGGGATGGC 18 TGATGAATGAAGGCGGTGT 19 125 - 115 129 - G41159
Z7977 5 CATTTGTGCCACATGTCCAG 20 TATGTGCGCATTCACACTCA 20 245 - 249 n - G40619
Z8003 5 TGGGAAAAGGGATCATATGG 20 CAACAGGGAAAATGCTCACA 20 217 - 211 - - G40621
Z8122 5 CTCATGGCAGCCCACTATTT 20 TTGTCTGCAGGTCGTGTCTC 20 263 - 255 269 - G40624
Z8444 5 ACACAGCCTGTCAGTTGTGC 20 GCCAATGGATATGGATACGG 20 239 - 229 - - G40646
Z8921 5 GCATGTGCCTGATTGCAG 18 ATGCACAGAACTTTGTGCCA 20 105 111 123 - - G40706
Z9022 5 AGACGCCATCGATAAAGGC 19 AGAAGGGGGGATCAGACACT 20 101 - 151 - - G41837
Z9028 5 CTCCCAGCTGTAAAACCAGG 20 ATGGCAGTGAGGCTTTATGG 20 110 - 102 108 - -
Z9106 5 GGCCATGATGGAGTGAAGTT 20 GAAAGCGCATACCTGTGTGA 20 147 - 141 149 - G40727
Z9109 5 AGCAGATCATATTAATGCGCC 21 TGCAGTTCAGGCCTCCTC 18 142 - 136 166 - G40728
Z9185 5 GTGTGGAGAGTTGGATTCATCA 22 ACCCGTCCACAGCAGTGT 18 144 - 150 - - G40744
Z9345 5 TCAGCTGACTGATCCCACAC 20 CTGTGTTTTGATGGGAGGGT 20 173 - 163 165 - G40771
Z9419 5 AAAACCAAGGGGTTGCTTCT 20 AATTTCGTTCTGCACAGCCT 20 263 - 277 - - G40790
Z9435 5 GGCAGAACCGAGCCATAATA 20 CAGTAACGGGAAGCTTCGAG 20 241 - 279 - - G40794
Z9568 5 ATCTAGTGGCGCCAAATGAC 20 TCGACAAGAACTTGATTTGCA 21 ? - ? ? - G40811
Z9815 5 CCAAGCCACTGAAACTGACA 20 TCTGAGCAATTAATCTGAGCAA 22 214 - 234 290 - G40843
Z9856 5 TTGCTTGTTTACATGGCTGC 20 GCCAGACTGTGACCAACTGA 20 131 195 141 - - G40849
Z9871 5 TGTGAATCCATGGGAATGAA 20 CCACATCTGCCATGAAAATG 20 198 - 270 320 - G40855
Z9969 5 TCTTTTTCCCACTGTACCGG 20 CTTTATTCCCCTGCAGACGG 20 109 - 87 - - G40873
Z10456 5 GTGGATGACCACTGAGCAAG 20 ACCCTCAGCTGCTCTCTGAG 20 127 - 143 - - G39796
Z10484 5 AGCGTGACCGACCTCAAC 18 ACTGGGCCTGAGTGTTTGAT 20 244 - 186 - - G39800
Z10517 5 TGGTGGGTACCTTAATCCCA 20 GGTTGGCAATCACAAACACA 20 238 - 208 - - G41699
Z10663 5 CTTCGCTCAGCAGCTCTTTT 20 GTGGAGACGTCAGCAGATGA 20 205 - 195 - - G39817
Z10665 5 GATCCCAGAAGGAACAACGA 20 ATTACAGGTTGGTGGTGGGA 20 102 ? 96 - - G39818
Z10807 5 TTTCTCATGCCGCTCTTTTT 20 GAAGAGTTATCGCTGTCGGC 20 212 214 218 258 - G39833
Z10827 5 CGCCACTTCACACAGTGTTT 20 AACTCGGCCTCTGTTACAGC 20 202 - 220 - - G39835
Z11311 5 CAGCTGACCGTTTACAGTGG 20 AGCGGCTCCTTTATTAGGAG 20 221 - 219 - - G39889
Z11349 5 CCTGCTCCCATCATAAGGAA 20 CCGCTCTGAATGATAGCAGA 20 138 - 128 - - G39895
Z11496 5 GAGCACAATAAAAGTCCCGC 20 TGCTTCAGAAAAGCACATGG 20 264 280 250 254 - G39921
Z11632 5 GCCTGTGATAAAAGCCAGGA 20 TACTGGTGCCCTGCTCTACC 20 209 - 199 211 - G39939
Z13279 5 CTCCCTAAGCATGATGCACA 20 CTGGTCTTCCACGTTGGG 18 256 - 240 - - G40000
Z13304 5 TTAACGATGCCACCTGATCA 20 TTCTTTTGGTGCAGATCGTG 20 296 - 326 - - G40004
Z13442 5 TCCCCACATTAAACATGGGT 20 TCAGTTTCACGTCAGCCATC 20 ? - ? - - G40022
Z13641 5 CGGCATATGTATGTGCTTGG 20 CTGACGTCTCTCTCCCAAGG 20 237 - 239 - - G40051
Z13833 5 AACCTGCCAGAGGGGTTACT 20 TCAACAGATGGCTTCAGTGC 20 ? - ? - - G40078
Z13866 5 TGAAACGCTTTGCAAGAATG 20 TTGTGGGACTTGGTGAGGAT 20 205 - 201 - - G40080
Z13883 5 CCTCCGAGACTGATGAGCTC 20 CTCTGGATCCTCAGCAGGTC 20 ? - ? ? - G40084
Z14069 5 ATATCAGCGCTGCTGTTGTG 20 CTGGAGGAGCTCCTGAACAC 20 ? - ? - - G40102
Z14077 5 CTGTAGCCTGCAGTGTTGGA 20 CACCAGAGGGTCGTTTGTTT 20 ? ? ? ? - G40104
Z14143 5 TAGCACCCTCAGGCAGAGTT 20 AGACATTTCCCTCACACGCT 20 142 170 166 182 - G40112
Z15414 5 ACAGGAACATCTCCTTCCACA 21 ATTTGTCCGACGGGTCACTA 20 202 - 130 212 - G41604
Z15424 5 GACCTTGTCCCTTTCTCGTC 20 TTGTTGGGAACAGGGAAGAG 20 273 - 279 - - G41605
Z20148 5 CATCTGCAGACGGACATCAC 20 CAGGACGGCCTGGACTATAA 20 245 - 219 231 - G40161
Z20480 5 CCCTCTCTGCACAGCTGAG 19 TCCCTCTGGCTGGTGTCC 18 271 - 135 251 - G40178
Z20915 5 CCTGCCCTCTGCAGAAAATA 20 TTCTCCACGTAACTCCAGCA 20 196 - 144 - - G40208
Z20951 5 TCCCACACAGAATGTCTCCA 20 TCAACGCCATCAGAGATGTC 20 134 136 138 - - G41736
Z21057 5 GCAGCACGACTGTCACTGTT 20 CTGACTGAACCACATTTCTGAA 22 199 - 217 - - G40219
Z21290 5 ATGCATGCACAATGTGTGAA 20 TGATGCCTTCAAGATTGCTG 20 166 - 148 - - G40237
Z21461 5 TGGGGAGTAGTTGGGAAGAA 20 GCTCAATTTTGGGACTTCCA 20 206 220 192 - - G40254
Z22152 5 TCGGAGTGGGTGGACTTTAC 20 ATGATAACACGGCCATCCAT 20 NA NA NA NA - G39448
Z22208 5 CGCTACAGCATCCACAGAGA 20 ACCTGTGCTTCTGGAGAGGA 20 277 - 315 - - G40300
Z22250 5 CTCATCCCCTTTTCTCCACA 20 GCGTTAAGTGAGGATGGCAT 20 208 210 208 216 - G40304
Z22309 5 AAACATTTCCTGCCCCTCTT 20 TGGCATTTTCAGGTTGATCA 20 214 - 198 218 - G41768
Z22523 5 CTCCACTGCCATCTGACTGA 20 TGCATCTTACGCTTTGTTGC 20 190 200 186 - - G40326
Z23075 5 GCTTTCCTGGCAGTCAAAAC 20 GCATGCAGGAACAAGTGCTA 20 NA NA NA NA - G39546
Z23076 5 TGGACTGGGGCTTATAGTCG 20 CCACCTTTTGTCAAGGGTTG 20 NA NA NA NA - G41091
GOF22 5 ACCATCGAGGAGCAGAGCT 19 GCAATCCCAATATACGTGCC 20 126* NA NA NA "Goff, et al., 1992" none
Linkage group 04LegendLinkage group 06

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Table generated Wed Oct 7 16:28:07 1998