Linkage Group 06 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z6523A 6 AGGACGTCACCAATGTTCTC 20 CTTGATAAAGGTGACCCGTACC 22 357 - 341 379 - none
Z265 6 CCTTCCCTCAAAGAGCGAG 19 TGGAGTCGCTCATTAGCAAA 20 NA NA NA NA - -
Z740 6 AAACTTTGCTGCTCTTCCTCC 21 CTCTGTCAGGTCCTGTGATCC 21 NA NA NA NA - G41417
Z793 6 TGGTGAAATTTTGGACAGCA 20 CAAGGACCAAATGGAAGGAA 20 207 209 199 - - G41419
Z880 6 TGATCTGAGACGTCTGCCG 19 GCGCTCTGACAGTGCTTACA 20 150 160 170 - - G41426
Z1050 6 ACTCTGAGTCTGCAGTCCCG 20 AACTGCTGCAGTTAATTATTGC 22 119 145 129 167 - G41321
Z1138 6 GAACGACGGCACTCTATCCG 20 TTGCAGCCTTAGTGTAAACGAA 22 NA NA NA NA - G39901
Z1265 6 ATATGTGCTGCTCATGATGAGT 22 AACAGACGAAGGGTGAAGGA 20 102 140 114 - - G41349
Z1461 6 CAGTACAGTGTCTGGAACACTGC 23 TGTCACGTCAGGTTTATATGGG 22 NA NA NA NA - G41378
Z1680 6 AACGCATTTCCTGCCTCGTC 20 CAGCTCTGGAGATCTGAGGGTT 22 NA NA NA NA - G41404
Z1701 6 AAGGATCAGCTGTTCTAACCCA 22 AGGCAGGTGTGAAAGCACCC 20 NA NA NA NA - -
Z3011 6 GCTGTGAGTGACTGCTGGGC 20 CCCTTACACCGAAAGTCAATGC 22 NA NA NA NA - -
Z3368 6 ACCCGCCTCCTGATGAACTG 20 CAGCTGTGGAACAGCGCATT 20 NA NA NA NA - G41443
Z3581 6 TTCTGCTGTGGCAACCCCTT 20 AGCTCATCCCTTTGGCAGATT 21 212 - 208 - - G41454
Z4297 6 AGACTCACCATGGCTTGCTCG 21 TGTGCAGAGGAACAGCCCTG 20 NA NA NA NA - G41499
Z4339 6 TCTCTCCGTGAGTTTCCGCC 20 CATCTCCATTGTTTCTGCTGGG 22 NA NA NA NA - -
Z4761 6 GGTGAATAGGGCTAAATTGTCA 22 GCCAAAAATACATTTTGGATTT 22 NA NA NA NA - G41536
Z4950 6 AAACGGATTCACAGACGAGCG 21 TTCATGAATGAGGCCCACTTTG 22 178 186 190 208 - G40378
Z5294 6 AGGGCGGCGAAATTGAAATT 20 AGCTCTAACCCCCTCCAAGCA 21 343 363 351 369 - G41570
Z6182 6 CATCAGCCAAACTTTAGACGG 21 ACAGCAGAGACGCCACATC 19 157 187 207 - - G41838
Z6330 6 ATCACACGCCTGCAGAGTC 19 CAGCATTCAGCATGTGGC 18 97 107 93 - - G41611
Z6446 6 GCTTCACTTCACTCGCACC 19 CATCACTGCTGAGACCGGTA 20 171 185 175 - - G41616
Z6601 6 TGGGGAGAGAAATCCCTCTT 20 AAGTTTCAGGACATCAAATGGG 22 152 - 144 146 - G41619
Z6624 6 TTCCCAGAAAACAGCCTCAG 20 CTGATCAACATCAAACGCAC 20 NA NA NA NA - G39594
Z6645 6 AATTGTCCAGTGAGACCGCA 20 AAGGGAGCCACAATTACGG 19 238 240 250 - - -
Z6767 6 AGGCCGGTAGCAATAATCAA 20 GAATGCCCTTCCGTATTGG 19 NA NA NA NA - G39604
Z6837 6 TGAGCACATACCACAGCCTG 20 GGCTGGGTGTGTCTTCCTAA 20 146 164 144 - - G40473
Z6907 6 TTTCCCAGAAGAGTGTGATGC 21 AAGGCCGACAGACAGAGAAA 20 ? - ? ? - G40482
Z7024 6 ATGGAGATGCTTCAACAGGG 20 CACACACATAAGGTGTTTGCA 21 198 240 164 172 - G40494
Z7248 6 GGTGACATGCCACTGATGTC 20 GGAATTTGTAACGTGTGGTGG 21 227 257 233 247 - G40528
Z7303 6 GAACAGCGAGAGTTTGCTCC 20 TACAAGGACCCGTTTGCTCT 20 249 299 305 - - G40537
Z7622 6 AGCACAAACACATCCAGCAC 20 CTGGTCTGAGCATTTGGTGA 20 209 211 203 - - G40578
Z7624 6 GGTAGCGTGAAACTATCCTCC 21 GAGGACTGGCTTTATGAGCG 20 223 - 195 199 - G40579
Z7647 6 GACAACATCCCAAACCGAAC 20 TCCTTCAGCGGTCTGTTTCT 20 251 - 291 241 - G40584
Z7666 6 ACAACGCAGCATCATCTCTG 20 CAGTCATCCTGGACTGCTGA 20 193 - 169 - - G40587
Z8229 6 GGTTGTGGGCAGTAGGTGAT 20 ACTAACGGCCATTGCAAAAC 20 111 113 121 - G40636
Z8245 6 TGCAAACTGCAGCAGTGAG 19 CTGGAACTAATGTGCTCCTCG 21 134 - 136 - - G40637
Z8342 6 TGGAGAGAAACGCCCCTT 18 TAACTTGCTGGCAACAGTGC 20 167 183 201 215 - -
Z8367 6 TCCTGAGAGAGTCTGGAGTTCC 22 GCTCGTGGCCTTCTCTACAC 20 130 138 124 - - -
Z8447 6 GTGGATTCACAACAAACCCC 20 TCATTCACATCAGCACTGCA 20 133 173 149 - - G40647
Z8532 6 CGGCAGTTTATATGCAGCCT 20 CCTGAGACACAAGACAGCCA 20 104 - 108 110 - G41686
Z8709 6 GGTTCTCTGTGAGGAGGCTG 20 GTTGTGCTGTTTGACGTGCT 20 230 - 228 232 - G40680
Z9142 6 TACAATGTGTCCTGCATTCTCA 22 TTTCCTGACTGACACACTCCC 21 132 - 96 98 - G40737
Z9230 6 AGCTTTCAAGAAGAATGGATGC 22 GTCCTCTTCATCATGCTAGCG 21 220 - 208 - - G40749
Z9254 6 TGATGTCAGCGCACCTTTAA 20 CTCTTTATGACGGCTGAATGC 21 301 - 341 - - G40759
Z9417 6 TCCCCCTCAGATGTGATTTC 20 CCCTACCTTGACCACCTCTG 20 339 - 299 - - G40789
Z9652 6 TTGTGTCAAGCTGGTGAAGTG 21 TGTTTGCAGCACTATCAGCC 20 244 256 226 - - G41188
Z9679 6 TGTGTTTTACAGACGGAGCG 20 ACGAGGGCGAGTGAATAATG 20 279 329 329 - - G40824
Z9738 6 CAGATCCGGAGCTTCAACTC 20 CAGCCAGCAGTGTAAGCTGA 20 188 - 182 184 - G40832
Z9870 6 CTCCATAGCAACAGGGCATT 20 AGCTCTCACTTCTCAGCTCATT 22 144 - 154 180 - G40854
Z10141 6 TCATGACTTTGCTGGTTTGC 20 TCTCTCCCACCTCCCCTAAT 20 158 - 124 150 - G39752
Z10183 6 CCGACATGGACAGACAATTG 20 TGTGTCCTGTTGGGGATACA 20 209 223 215 229 - G39760
Z10339 6 GCTCGAAAGTGCTCATCTCC 20 GAGGTCTGCCATCTCACACA 20 186 - 216 - - G39782
Z10396 6 GCAGAGGAGGCGTCTCATTA 20 GTCACGAGGGTCTCGATGAT 20 ? ? ? - - G39791
Z10479 6 CTGTGGCTGTAATTGCTGGA 20 TCTAATCCGCTGTCAAACCC 20 100 - 96 - - G39799
Z10581 6 TCCACATCAGATGAGGAGTAACA 23 ATGATCTCCTCGTCCTCGTG 20 182 184 188 - - G39810
Z10615 6 TGCACAGAAAAATATAACATGAACA 25 TGCTGTATTTCCATCAGTCTGAC 23 92 94 98 - - G39814
Z10657 6 CCAGAACAGTGATGAAGCGA 20 GTCCCTGAGCTTCAGCAGTC 20 234 254 262 - - G39816
Z10914 6 GCTGTTTACTTCGGCAGCTT 20 AGAGACGGCGTCTGTGTTCT 20 267 - 241 243 - G39842
Z11276 6 CAGCTCATTGTTCATCCGAA 20 ATTGCAAATGTGCCATCTGA 20 207 269 213 - - G39886
Z11310 6 CTGCACAACACGGACGATAC 20 ATAATGGCCTGTTTGCTTGC 20 ? - ? ? - G39888
Z11466 6 TCTTCCGGCTGAGTTTGAGT 20 GCATGGGGTGAATTAAATGG 20 176 - 173 183 - G39917
Z11478 6 CCCAGATCACCATTCATGTG 20 GCCTTTGGAAAATCCAGACA 20 116 184 132 - - G39918
Z11919 6 CAAATATGAACCCACCCCAC 20 GCTTCACACACCTGGAACAA 20 209 - 223 257 - G39973
Z11988 6 AATGTGTGAGGATGCCTTCC 20 GCAGATCAAAGCATGAAGCA 20 149 - 217 - - G39979
Z13275 6 CATGCTGTCCCAACACAAAC 20 CACCTGTGGATGTTCAGGTG 20 140 142 134 - - G41601
Z13328 6 AAGGCAAGACCTCATTGTGC 20 GCAGGTACGTCTCCTTCAGG 20 238 242 312 - - G41758
Z13538 6 TGCTGGAAATGGATGAATGA 20 GTACCTTCTGCAGAGCTCCG 20 196 198 200 206 - G40035
Z13556 6 CCTGAAATCATCAGCGACCT 20 CGCATAGAGGACCTACGAGC 20 210 - 200 224 - G40037
Z13614 6 ACCTCGACATGGAGACAACC 20 ACAGACGAGGCACACATCAG 20 289 317 245 269 - G40044
Z13952 6 CTAAACACTCCCTGAGCGCT 20 ACCTTCATCTCTGCTCCCAA 20 ? ? ? - - G40094
Z14038 6 CTACTGCATACCCGACTGCA 20 GAATGTGATTGGGATTTCCC 20 108 130 220 - G40099
Z14050 6 AGGACCAGCTGTCCTTCTCA 20 TCAGCCGGAGGAGTTACATC 20 ? - ? ? - G40100
Z14074 6 GTTTTGCCTCTCGCTGACTC 20 ATATGCTGCCCCTGTTTGTC 20 ? - ? - - G40103
Z14110 6 TTCATAGAGTGCTGGCATCG 20 CAACTCTGCTTTCTGCCACA 20 ? ? ? - - G40110
Z14158 6 GCTTTCTCAGGCTGTATCGG 20 CACAATCCCACCAGACCTCT 20 168 - 192 - - G39190
Z15448 6 ATGTTAGAAAACAGGCGCGT 20 GCCATGCATAACTTTAGCACA 21 144 - 184 - - G41097
Z15493 6 TGCTCTGGTGTGATGTTTTACC 22 CCAACACACTTTCGTCCAGA 20 184 186 180 - - G40129
Z17212 6 TTTGAAAAGTCTGTCCATCACG 22 GGACAAGCAACAGGTCAGGT 20 118 - 140 154 - -
Z17248 6 CAGAACCTCAGGCTTTACCG 20 TGGATAGAGTCCATAAGCTGGA 22 125 - 113 257 - -
Z20207 6 CGCACATACATGCATCCAAT 20 GAAACAGCCTTGGAGGAGTG 20 280 - 178 - - G40164
Z20381 6 TGAAGAATGCACAAAGCCTG 20 TCCAACATCGACATACCAGC 20 NA NA NA NA - G39249
Z20411 6 CAATGCCCTAGCAACCATTT 20 CCCCTGATTCTGGAGTGGTA 20 138 - 98 118 - G40172
Z20932 6 TGTGGAAATGAGGAAAAGGC 20 CTGGTGTCAGACAGAGCCTG 20 240 - 272 262 - G40209
Z21489 6 TGCAGATGTGAAAGGAGACG 20 TGCCTACTGGTTAACAGTCTGCT 23 160 172 156 - - G40258
Z21901 6 TGGAGTCTGAGACGGCTCTT 20 GGGAAAGACAGTGAAGCTGG 20 158 160 164 - - G40275
Z22253 6 GCCACCACTCGGTCAAAC 18 AGCTGTTTTTCCAGGGGTTT 20 290 294 276 - - G40306
Z22345 6 CCTCTGACTGACCACTGCTG 20 GCAGCTCACTGTTTCCATGA 20 235 247 237 241 - G41769
Z22444 6 CGAGCAATAACTGCACTGGA 20 CTCTGGTGTGTCCATCCATG 20 150 158 148 - - G40321
Z22467 6 ATTGATGGACCGTTTGGTTG 20 TTCAATTGTGCTCACTGCAG 20 151 - 87 105 - G40322
Z22712 6 TCAAACGCATCAGACTGGTC 20 ACAGACGATCAGATCAGGGG 20 NA NA NA NA - G39512
Z22745 6 TGCTCAAACCAGCAACAGAC 20 CCCTCTGTTGACTAGTCCCC 20 NA NA NA NA - G39515
GOF2 6 GACAGCTCCATTAACTAAACCTTT 24 GTCAGCAAGCTTTCTGTCACA 21 187* NA NA NA "Goff, et al., 1992" none
GOF20 6 TGCTGACCGCTGAAACTG 18 TGAACGGCCACATAAATAAGC 21 133* NA NA NA "Goff, et al., 1992" -
GOF26 6 CTGTGTGAGATTGTGTGTTTGTC 23 ACAACACGTTGCATTTGTCG 20 241* NA NA NA "Goff, et al., 1992" -
Linkage group 05LegendLinkage group 07

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Table generated Wed Oct 7 16:28:07 1998