Linkage Group 07 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z10281 7 CGTGATCACAGCAGACCG 18 GAGTTTGAGCATCAGGAGCC 20 105 - 103 133 - G39775
Z10367 7 TGCCCTTATCTCAAACACCC 20 TGTTCTTTTGTAGCTCAAAAGCTG 24 164 - 158 170 - G39787
Z10441 7 GCATTCAGATTCTGGGGTGT 20 CGGATGAACCCATCAATCTC 20 244 - 426 - - G39794
Z10451 7 GAGCTTGATTCACACGTCGA 20 CTTTCCCCTGTCAATCCAGA 20 214 - 210 216 - G41697
Z10457A 7 ATATTTCTCCGGTGGTGACG 20 GCCAAACACACACAGATTCG 20 NA NA NA NA - none
Z10487 7 AATATGCACTGCATGTTGCG 20 GGTTGCCAAGCCAAGTTTAA 20 169 205 113 159 - G39801
Z1059 7 AACAGGTGACAGAGCACACG 20 GGGAGAGGGCAGGACAATAT 20 150 - 125 - - G41322
Z10780 7 CAGCAGAACACACGCCTTAA 20 CTGTGTGTCTGCTTTTCCCA 20 248 - 222 254 - G39828
Z10785 7 AGGTGGGCAAACACTCAAAC 20 TGTGAGCATTGGGTCACCTA 20 183 - 201 - - G39829
Z11052 7 CGTAACTCACTGTGAGCGGA 20 AAGCAAGGCACCTCTGAATC 20 147 - 145 - - G39862
Z11085 7 GGTTTGTAACTCCTTGAAGGACA 23 CTCATCTCCACCTCCAGAGC 20 212 - 218 - - G39868
Z11119 7 GAAAGGGCTCGATATTGCTC 20 AAAGGACCTTCGCTTTGTGA 20 139 - 135 - - G39871
Z11122 7 GCTCTTCTTGTCATTTCTGACA 22 CGGCTGAAAAGAACTGCATT 20 299 - 279 281 - G39872
Z11359 7 TCTGTCTGCACTCGGATGTC 20 CCGAGTTCACACTCCACTGA 20 134 - 110 122 - G39897
Z11545 7 CTGTTCCTGCAGCTGCCT 18 TCGTTTCCAGCTGTTCACTG 20 139 - 145 151 - G39929
Z11625 7 CTGTTGATGTTCGCCATCAG 20 GTGCAAACAGGAGAACAGCA 20 299 - 305 321 - G39938
Z11660 7 CGTCTCATTTCTTTGACGCA 20 TCTTCCTCAGGCCGTTTTAA 20 187 - 177 - G39942
Z11813 7 TTGGAGTGAGAGCGAATGTG 20 TGCACAGCATTGACTGATCA 20 241 - 211 219 - G39961
Z1182 7 GAGCAGACACTTTACATTTTGTGG 24 GACACTTACAAAGAGTCTTTCATTTCC 27 NA NA NA NA - G41335
Z11894 7 GAGAGTGTCAGCAAGTCCCC 20 AGCAACCGTTCTTGTCGTCT 20 165 - 161 163 - G39970
Z11982 7 CTCCATTAAAGCCGATCCAA 20 CCTCGACCTGCTGACGTATC 20 240 - 250 292 - G39978
Z1206 7 CGTCTGACAGCCTGCATG 18 CTCGGCGCAGTAGGGAAC 18 NA NA NA NA - G39981
Z1217 7 CGCTTGTCACCAAGGTACAA 20 AACGGAAGTGAATTGCCAAC 20 200 - 180 - Use at your own risk G39983
Z1224 7 TCACAGTGGTGTAATGCTGC 20 ACATAGTGGACAAACCTGAACA 22 NA NA NA NA - G39984
Z1239 7 AGGAAAGGCCCTGCCTTATG 20 TGGGCTGTACTCATTTATGTTG 22 197 - 237 269 - G39987
Z1313 7 TGGGTTTACAGCAGTTTGACGG 22 GGTCCACCGCAACATCCTGT 20 NA NA NA NA Use at your own risk G41354
Z13253 7 TGTTGATGTTGACCTGGGAA 20 TGCATTTCCTGGATGAGTGA 20 144 - 146 - - G41093
Z13286 7 CCCCTCGCCACATATATTGA 20 AAAATGGCGCCAAACTGTC 19 165 - 157 161 - G40001
Z13729 7 ACATCCATTCCAGCAACACA 20 CGATCCTGGGCTTTATCTGA 20 ? - ? ? - G40068
Z13789 7 TCAGCTCTGTTTGTGAACGC 20 CTCCAAATTTGCACAAACCC 20 190 - 150 - - G40073
Z13834 7 TCCACAACTGAGCAGACCTG 20 GGGTTTGATGTCCATCGGTA 20 ? - ? ? - G41720
Z13880 7 TCCTTGCTTGGAAGAAGAGC 20 AGGGAAAGACACTGAGCGAA 20 ? - ? - G40083
Z13892 7 GCTTTTATGGGCTTCTGCAG 20 AACCAGAAACGCAGGAGAGA 20 ? - ? - - G40086
Z13934 7 GCTGTCCAGTTTTTCCCAGA 20 CGCAGGGCATCCTTTATTTA 20 ? - ? ? - G40089
Z13936 7 TTGGTGACCAGGGTTTAAGC 20 CCACCCTCTTAATTTGGCTG 20 ? - ? ? - G40091
Z1535 7 ACATTTCTCTTACTCTAGTTTTCCCTG 27 TTGGTCCAAACCAGACAACA 20 129 - 115 125 - G40120
Z15412 7 CAAGCACGGAGATACAAGCA 20 ACTGCATTCACATCAACACTCC 22 207 - 209 - - G41839
Z1713 7 TCATTCACTGAGCCTTCAAGGG 22 ACTCCAGACCCTCCATGGTACC 22 NA NA NA NA - -
Z17295 7 GCTGAAAAGCGAATTTAAGGG 21 GGAAGTGAATTCCAAAGTGACA 22 115 - 199 209 - G41101
Z177 7 GGAAACTCTCACGCTCGTTC 20 ACGGATGTTCCTGTAAACGC 20 NA NA NA NA - -
Z1798 7 ATGGCATGCATTTTACTAACGG 23 CGAATCGTGGCCCTGACCGT 20 NA NA NA NA - G40142
Z191 7 AATATAGCGAAGGGACGATCC 21 GAGGACTTCAGCAGAAACCG 20 NA NA NA NA - -
Z20421 7 GAGCACACATCTGCTGGAAA 20 CCTGTGTGGGAGGAAACACT 20 262 - 256 282 - G40174
Z20495 7 ATGGAACAGCCACAAAATCC 20 CAAGTGCTGCGAAGTCTCAG 20 249 - 239 - - G41731
Z20576 7 CATCCAGTGAGTCTCAGGCA 20 GGGCAATAGGGCTGAACATA 20 106 120 94 - - G40184
Z20715 7 CATCTGTAAGTGCCCAGCAA 20 GTGTCCGGTGAGGCTACAAT 20 130 172 122 124 - G40197
Z20853 7 CTGCAATGATTCGTTTGTGG 20 TCTAAGATCCTCAACCACTTGG 22 176 - 184 - - G41735
Z20963 7 CCAAAAGACTGGATGGCTGT 20 CTGAGACGCCCCTACAGTTC 20 221 251 245 249 - G40212
Z21393 7 CAAGCACGGAGATACAAGCA 20 GCCTCGCGGTAATCTACAGA 20 168 - 172 - - G41742
Z21519 7 GCCTTTCCCTCCAAATCTGT 20 GGTTGCCTTTTCCTATAAACCTG 23 191 - 221 241 - G40261
Z21628 7 GGGGGCAAGACAGTGTTTAA 20 GATGGAGAGAAAGTGAGCCG 20 NA NA NA NA - G39380
Z21689 7 TATCAGACATCATCTGCCGG 20 CATCATGGAACAATTTTCAACC 22 117 - 113 115 - G40268
Z21714 7 TATTCTCCGCGTTGTGTGAA 20 TCCCCGCTGTGGAGTAAATA 20 292 - 286 304 - G40270
Z22040 7 TGAAACAAATCCAGCACCAA 20 AGCGCCCTTCTTACCTAAGG 20 104 126 96 100 - G40285
Z22244 7 AGAGGAAACCTGCTGGAACA 20 CCAGCCAGATCAGAGACGAT 20 180 - 178 198 - G40302
Z22628 7 ATCTGAACAGCCAGAGCCAC 20 TGGAAGACTTTCCACACTCATT 22 NA NA NA NA - G39498
Z3008 7 TGAGACATTGCCTGATTAACTTA 23 AGACACCGGGGCACAGAAGA 20 257 - 189 215 - -
Z3028 7 TAAAATAAACCCTGCAGCCGTA 22 ACTGAGCCACCGTGCCACCC 20 246 - n - Use at your own risk -
Z3057 7 AGTCTGTTTGGCCTCAGCGC 20 TCTTGGCGACTGAGTTCTGGG 21 NA NA NA NA - -
Z3273 7 GCAGACACAACTGACGCATT 20 CACCCAGATGTGATTTGCTG 20 NA NA NA NA - G41440
Z3445 7 TTGGGAGACCTACAACCCAGAC 22 GCGTCTCTGGTGGAGGCATA 20 122 - 126 172 - G41445
Z3668 7 TCACGTAATTTCGGGTGTTTCA 22 TCATGTAGGACTTTTGCCGCG 21 154 - 124 - - G41459
Z4375 7 CAATTTGCTTCTGATTCA 18 ATAGAGATAGGTCAACAATCG 21 NA NA NA NA - G40360
Z4507 7 TCACCCCATATCACTCCACAGC 22 TTCGGGATCTGCAGCGTGTA 20 231 - 223 - - G40365
Z4706 7 AGCTGGAAAGCCAGATGCTCA 21 CCCCATCAACAAAGCTCTTGC 21 188 - 200 - - G41533
Z4999 7 TCGCTGGTATGACAAACACGTG 22 GGCAGACAGGCAGAAAGGGA 20 NA NA NA NA - G41548
Z5450 7 TGCAGAAGCCTGAAACAGAATG 22 AACACATCAGTAGGCGTGCACC 22 NA NA NA NA - G40389
Z5467 7 AAAGCCCCTGATGAATAATGGG 22 ATCGCTGTTCTCTGGCGACC 20 NA NA NA NA - G41581
Z5563 7 TGCAGGTTGTTCGGTCCTGA 20 TCACAATGCACACAACCCCC 20 258 - 260 - - G41588
Z5649 7 TCAGAGTTGCGGTCAAAACATC 22 AATGCATCATCACCAGGCTG 20 NA NA NA NA - G41594
Z6273 7 GCTGTTGCTTGGTGACTGAA 20 CAACTGGAGACAGACTTTGTCG 22 271 - 223 243 - G40413
Z6483 7 AGGAAAATGAATGCCCGAG 19 AGCAACGAGTGGCATTCTCT 20 244 - 246 248 - G39580
Z6523B 7 AGGACGTCACCAATGTTCTC 20 CTTGATAAAGGTGACCCGTACC 22 - none
Z6819 7 ATTGTCCTGTGGATTCTGTGC 21 CACCTGCTCAATACTTCTGTGC 22 139 - 95 105 - G40472
Z6852 7 CATGTGGTACAGTTGAAGGGG 21 ATCATTGGAAACCATCCATACA 22 ? - ? ? - G41129
Z6861 7 CTGCAGTGCAGCACAGGTAG 20 CCTGCATGCAGTCTGACG 18 ? - ? ? - G40477
Z7069 7 CCACACAGACTGACCCCTTT 20 TGGAAAGGAAACTGTCAGGG 20 147 - 129 133 - G40497
Z7109 7 CGCCAAATCAAGATACTGCA 20 CGGAAATCGTAATATTGTAAAATGC 25 165 - 203 - - G40502
Z7244 7 GTCTCCAATGGCTGAGCAGA 20 GAAGAGCCACCGATGAGTTC 20 122 - 118 120 - G41627
Z7255 7 ATGCCCACAAACCTTCCAT 19 ACACACGCGCAGAGATATACA 21 156 - 112 - - G40529
Z7422 7 CTGGAGGAGAAAGTCAACCTC 21 CATCTGCTGTGGAGGCCT 18 192 - 180 194 - -
Z7479 7 CTGCTGGAGATGAGGGATGT 20 TAGAGCGGATCAACCAAACC 20 137 - 149 159 - G40559
Z7549 7 CACTGCATTACTGAAGCCGA 20 ATTGAAGGTGCATGTCGTCA 20 145 - 103 115 - G40568
Z7555 7 GGAAAACAGCAGTCTGGAGG 20 GACGGTGAAGGTTCTGGAAA 20 117 - 99 101 - G40570
Z7562 7 GCAGTTCACATAAACACTGATGC 23 CAGAGACTCTGCCCCTGAAG 20 175 - 183 235 - G41151
Z7836 7 GGGTCTGTCCCTAGTGCTGA 20 TTTGTTCTGACCACCTGCTG 20 NA NA NA NA - G40599
Z7875 7 TGCCGCAAGATGTTTATCTG 20 CTGATCGGCTTGTGTTGAGA 20 164 - 144 154 - G40605
Z7958 7 TGTCCCTCTGGAGAGATGCT 20 TCATTCCCAACTCAGAACCC 20 210 - 202 204 - G40614
Z8145 7 GCATCTTCAGACAGGACGGT 20 CTGAGGAATATACAGCGCCC 20 253 - 225 291 - G40625
Z8156 7 GGCAATGGACTCTTTCAAGC 20 GTTTCATGGCTTACATGCCC 20 208 - 260 268 - G40627
Z8213 7 ATGATGGAGGACAGAGCCC 19 ATCTCTCATCACGGCCAATC 20 125 - 119 127 - G40632
Z8216 7 CTTAAACCCCACAGTCAGGC 20 GATGCTTTGGATTCAAGGTTG 21 119 - 117 123 - G40633
Z8218 7 CCAGAAGTGTGTTTCTACACGC 22 ATGATGTGACTCCCAGAATGC 21 214 - 202 238 - G41682
Z8252 7 AGGTGTCATGAGTGCTCTATGC 22 TGCAATTTACACGTTTTTGTCA 22 110 - 106 130 - G40638
Z8495 7 TCATAATCATGTGCTCCTCTTGA 23 TTGTTGTTGACGCTGCTTTC 20 246 - 224 234 - G41678
Z8536 7 CCAACACTGGATCACACCTG 20 GAAGAGGCCAACACATCTCC 20 NA NA NA NA - G40665
Z8540 7 AAGTCACATCTGGGTACGGC 20 TGCATCACTGAAAATGTGCA 20 181 195 177 189 - -
Z8574 7 GGTTTGAATGGTGGGTGAGA 20 CTCTGAGACCTGCTCCAACC 20 213 - 225 - - G40667
Z8604 7 GTGCGTAAATGGATCCCATC 20 TGAAGCAGGACAAAGAGTGC 20 158 188 154 198 - G40670
Z8693 7 GCTTTTTGAGCAGATGAGGC 20 CATGTACGCGTTGACTTTGC 20 176 - 220 - - G40676
Z8889 7 ACACACATGGGACAGGGATT 20 CAGGTTAAACCCCTTTGTGG 20 250 - 232 - - G40704
Z8975 7 TGTTCAGACCCTGAATGCAC 20 TTCAGTCATTCAGAAGGGGG 20 196 - 136 172 - G40711
Z9067 7 TGCACACTGGTGCTGGAT 18 TTGTGTCCAGTGTCTGCACA 20 149 - 175 241 - G41630
Z9068 7 TGCGCTTCATCCTCTACTAAA 22 GTGAGCTGCTGCCCTGTG 18 250 - 222 236 - G40724
Z9133 7 TTTGATTGTCCCTGCTTTACG 21 AAGCCCCATCTCCAAGAACT 20 233 - 219 - - G40736
Z9249 7 AGTGAACGTCGTGCCACTC 19 TAAGAGGGTTGGGTTTCGG 19 195 - 211 281 - G41636
Z9273 7 CAGGAGTTGCAGAGTTTGTCC 21 CTTTGATTCAGGTACCATTTGC 22 261 - 247 - - G40761
Z9323 7 TGTGTGAGACACAGGTGAAGC 21 AACTGCTCAGATGTGACAGGA 21 190 - 168 190 - G41178
Z9521 7 AGATCTCCCACTGACTGCTACA 22 GCTTGAATGGGAATTGGAGA 20 90 - 86 102 - G40805
Z9804 7 TGTCCGTGTCAGTTCTGCTC 20 GGAGGAAGTGTTCGGATGAA 20 136 140 136 138 - G40842
Z9869 7 CAACTGGGCAGTTAGGGCTA 20 CAGGGCTGAGGTCACACATA 20 159 - 97 113 - G40852
Linkage group 06LegendLinkage group 08

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Table generated Wed Oct 7 16:28:07 1998