Linkage Group 08 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
GOF9 9 ATGCTGCCATTATGGTAGTGC 21 TTCACTTGGATAAAGTACTGGGTG 24 124* NA NA NA "Goff, et al., 1992" -
Z140 8 ATTTGGCAGATTCCTTCATCA 21 GGAACACCTGTGCCCGAG 18 NA NA NA NA - -
Z170 8 CTGAAAGTCTTCACATCTGTGACA 24 GAATAAAGGTGGGGGGTGTT 20 NA NA NA NA - -
Z789 8 CTCCTGCTGGCCCAGTAAT 19 ACTGAACATTCAGGCTTAAATGC 23 201 - 203 - - G41418
Z870 8 TTCCGGCTCTCAGTGTCTTT 20 CCTGACCAGCATAGAGTCATG 21 NA NA NA NA - G41424
Z987 8 TCTGGTTTCACATTAACATGTGC 23 ATCTGCTATCGGCTCTGTTAGC 22 NA NA NA NA - G40853
Z1052 8 CCCATTGGAACTGAGACACCTT 22 ACAGGGGGGGCTAATAATTCTG 22 138 176 142 - - G39804
Z1068 8 GGTGAGAAACACAAGAGCAGC 21 CAGACCCAGATTCTTCAGCC 20 122 - 132 - - G41323
Z1231 8 CCCAAATGTACAGGACCGG 19 CGCTTTACCTGTTACAGTGCC 21 NA NA NA NA Use at your own risk G39986
Z1402 8 GATCAGGGTGCATGTACTGAA 21 TCTGCTTTCTGTCAGGGGAT 20 169 185 179 199 - G41363
Z1569 8 GAAAGTAACATGGCATATAAGTCCG 25 CCTGGAGCCTGTGTTTTGTT 20 NA NA NA NA - -
Z1634 8 AGCCACAGCGCTGGAGATTC 21 GTGAGTCCAACACACCGCGT 20 NA NA NA NA - G41845
Z1637 8 GGCTTTTGGATGAAGGTTGAGC 22 GGAATCACAATGGCAGCAGA 20 105 143 103 109 - G41396
Z3083 8 ATGTTCGATGTTCTGCACTTGC 22 GCTGTGAGGCGAACGTGCTA 20 NA NA NA NA - -
Z3526 8 AGCTGGTGTATTTCGGAGAGCA 22 CACACACTGACGTGCGGATG 20 NA NA NA NA - -
Z3885 8 TCCTTGCGAGAGCAAACGTG 20 CTGGGATCCACACAATTCCTCC 22 NA NA NA NA - -
Z4077 8 TTCACAGCTTCAGTCCTGCTGG 22 TCACGTCTCACCAAGAACCAGC 22 NA NA NA NA - -
Z4318 8 GACCTAATAAAGTGGCCGGT 20 TGGTGAAAGCGCCCATCTTT 20 NA NA NA NA Use at your own risk -
Z4323 8 TCTGTCCTCTCGTCCCCGAG 20 AAATTAGCACACGTCGCGCA 20 NA NA NA NA - G41504
Z4637 8 ATCAATGGATTGGACATGGGTT 22 TCTGTGACTCTACAGCGCCCC 21 NA NA NA NA - G40366
Z4956 8 GGGGAACGGAGGTCGAAATC 20 GTTGCGAGCTCCCAGCAAAC 20 263 - 239 - - G41547
Z5081 8 GCCCCCCTGAATTATTAGCACC 22 CGGTGAAGTTACGGTACCATGA 22 211 - 189 - - G41554
Z6058 8 TAACCGGACTCACCAGAACC 20 AGACGGGGCTGAGATTATTG 20 310 - 306 - - G40399
Z6763 8 TGATGACCTCCTGACAGTCG 20 ACCCAGAGGTAAGACGCAGG 20 133 - 119 121 - G40464
Z6764 8 ACTTGAGAGGAATCAAGCAAGC 22 AGGACAGTATGACTGCAGTCTG 22 155 197 161 - - G40465
Z6867 8 CATCTTACACTGAGTACAGCGG 22 ATCCACTGCAGTGTTTATCCG 21 ? - ? - - G41131
Z7130 8 GGAGTGTATTTGGGGCTTGA 20 CAATACTCCCTCCCACAGGA 20 329 - 185 - - G40507
Z7370 8 GCAACAACCAATATTTGCCA 20 AAGTCCTGACTCGAACTTCCC 21 157 - 131 - - G40552
Z7535 8 TAGGCATGATGTTCAGAGCG 20 TCACTGCAGTGTTGGAGGAG 20 95 137 93 103 - G40567
Z7642 8 CTGAGGGTGAACTGTAGAAAGTG 23 GATTGCACAAAGGAGGGTGT 20 191 199 113 121 - G40583
Z7671 8 ATCATTGGAGCAGATGAGTGG 21 GCCATGTGAAAGGGCATC 18 231 - 239 255 - G40588
Z7819 8 TTTTCATCTGCTCCCCAGTT 20 TTCACATGGACAACAGTGCA 20 146 134 156 - - G40596
Z7856 8 CAGCAAACCCTCTGAACACA 20 CTGGCACACAGACAAGAACA 20 128 - 184 196 - G40601
Z7962 8 AATCAATAACTCAGGCAGGCA 21 ATACGCGCACGTCTCTCTTT 20 197 223 177 255 - G40616
Z8474 8 CCCACATCAGGTCAGGAACT 20 TCCTGCTTCACATGCTGAAC 20 271 ? 283 317 - G40657
Z8703 8 GGCTGAGGATCATGTTTCGT 20 GGGTGAATGTATGACATTTTGG 22 284 - 240 258 - G40677
Z8770 8 GCACAGCATGGCTCTTTGTA 20 TCCAAAATTCCACTTCTGGC 20 264 - 190 - - G40685
Z9006 8 AAAGTGAAATCAATCCCACCC 21 TTTCTCGTTTTCTCCCTCACA 21 218 222 178 198 - G41840
Z9279 8 TGCATAAAGTCAGGAGGTTCA 21 TCTGCGCTTAACAATGCACT 20 150 154 144 166 - G40762
Z9420 8 CGCCATACAGCAGAAACTCA 20 TGGCCAGTGCTGATTTATTC 20 140 - 138 n - G40791
Z9637 8 AGTGACAGCACCATGTTATTGG 22 ACCACTAGGGACGTCAATGC 20 160 - 184 - G40818
Z10048 8 GCAGCTTTTACTCCCAGTGC 20 CTTCATTGGTCATGTGTCTGG 21 235 - 223 - - G41679
Z10121 8 GCATTCACTGGAGAAGCACA 20 CTGAGCAGAAAAGCAGCCTT 20 100 - 106 - - G39748
Z10337 8 CTCCACTCACTGAAGGAGGC 20 GCGCTACATGAGAGTCCTCC 20 297 - 299 303 - G39781
Z10546 8 GCAACCAATGGGATTATGCT 20 GGTTGATGGAGAGGACAGGA 20 188 222 176 200 - G39806
Z10731 8 TTGAGTCAGTGAATCTGAGCTG 22 GCGGACGCAGGTACAACAT 19 183 189 179 181 - G39823
Z10868 8 TGGTGGAAAATGACACTCGA 20 TGTCTCCTGGTTTAGCCACC 20 213 281 209 229 - G39837
Z10929 8 GCACACCATCATGATTGAGG 20 TGTGTTTCATCACGGTTTGC 20 141 161 113 123 - G39845
Z11001 8 GGATCTGACAGGGGAGATCA 20 CGAGGTGTTTTTCTCTCATGC 21 149 167 175 - - G39856
Z11148 8 TGCTGTCTTACCTATTTCAGCC 22 GATAACATGCAGACTCGCCA 20 83 113 91 95 - G39875
Z11237 8 CCACAGGCACCCTCATCAT 19 TTGAATAGCTGGGGTTACGG 20 163 ? 219 - - G39880
Z11383 8 GAGGACTGGCTTCTGTACGC 20 CACTGGAGGGCAACACCTAT 20 ? ? ? ? - G39903
Z11492 8 CTGCTGAAGGAGCTGAGCTT 20 CAAGAGCTCAGACGAGAGGG 20 127 189 113 117 - G39919
Z11623 8 GCTAAGAAAGACGCATTACGC 21 TTATGCGTGTTGAATTTGAAGG 22 - -
Z11641 8 GCTCTGCAGGGGTTAAACTG 20 ACCGAACATCCACACAGACA 20 222 252 188 198 - G39940
Z11922 8 GTGATGATGAAGGTGGGCTT 20 GGGCTACAGCTTCCACTGAG 20 238 266 250 300 - G39974
Z11946 8 TCGGCTAATGACACCTACCC 20 TCTGGAGCCCTAAAGGGATT 20 294 - 258 318 - G39976
Z11948 8 CAGTTCAGTGATGGTCACTCG 21 TTCAGTCTGTAATTGCAGGTCG 22 251 277 221 - - G39977
Z13288 8 AGTCTCACGGTGAGTCTGACA 21 GGCAGCTTTCCCATCATG 18 156 162 154 170 - G41603
Z13360 8 GCATTCACTCATCATCAGCG 20 CATACAAAAGATACAGGCATGCA 23 126 142 132 148 - G40012
Z13412 8 TGGTAAGGGAAGGAATGACG 20 GCCTGTCATACCGCTCTGAT 20 252 - 258 - - G40019
Z13418 8 TCTCAGCAGCTGTTGATTGG 20 TGCAGAGGGGTTTAATCCAG 20 217 - 205 207 - G40020
Z13565 8 ACTCACCCACAGGGACTCAC 20 GATCAAACCGGCATTGTGAT 20 124 - 132 200 - G40039
Z13984 8 GCTTCAAATCTCATGGAGCC 20 GTGAAACAGCCTGGCAAAAT 20 ? - ? - - G40095
Z14025 8 TCTCATATCCTCCAGCCCAC 20 CCTATTGACTCTGTAGACCCCG 22 161 - 167 - - G40098
Z20106 8 GAAGCAGGCTCTGTTCATCC 20 AACGCATGAGGAGTGTGTTG 20 ? ? ? ? - G40157
Z20113 8 TGACGTCACACATAGACCCC 20 CATGCCTTGCGTTTATTGTG 20 ? - ? - - G40158
Z20180 8 CCTGCTCTGACCCATCTCTC 20 GAGAAAGCAGCCAAACGAAC 20 205 243 203 231 - G41729
Z21115 8 AAGGTTTCTCAATGCCAGAA 20 CATCCTTGCTTTGGTCACAA 20 300 336 296 - - G40224
Z21315 8 CACAACACATTTCTGTTGTGGTC 23 GCGCAAGTTTGTTTAGAGGC 20 NA NA NA NA - G39340
Z21390 8 CAAAAACACAGAACTGGGATTG 22 GTGGGAATTGGACTCAGGAA 20 165 - 137 145 - G40246
Z21465 8 AGGCAACCATAGCAACCATC 20 GCTCCCCATCTCTGAGTCTG 20 164 - 170 188 - G40255
Z21483 8 TTTGCATGTGCCTCAAAAAG 20 TCCACGAAATCATCCTCACA 20 112 - 120 206 - G40256
Z22270 8 CCCCTTTCGAAAAGACATCA 20 TGCTGAACATCAGAGCTGCT 20 194 246 198 238 - G40308
Z22307 8 CCATGCAGTCCAAATGCATA 20 ATTCATCTTGCTCCCCACAG 20 223 - 205 215 - G40310
Z22483 8 ATGCCCATCTGACAACCAAT 20 CTGTCTCTCCCAGAAGGACG 20 143 - 137 - - G40323
Z23009 8 TGCATGACCTGCTTCTCAAC 20 GCTTTCACAACTGCCGCTAT 20 NA NA NA NA - G39536
Z23039 8 CCCTACTGTGAGCATGAGCA 20 GAACTGAGAGAATAGCAGGACGA 23 NA NA NA NA - G39541
GOF13 8 CTGGCCTTTGGTTTATCATACATT 24 CATGGATTACTTTCACTAAGCATG 24 208* NA NA NA "Goff, et al., 1992" none
Linkage group 07LegendLinkage group 09

If you have questions, comments or problems contact us.

Back to Index
Table generated Wed Oct 7 16:28:07 1998