Linkage Group 09 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z10130 9 GCTGCTGACAGATTCAGTGC 20 TACCTGCTGCTGCAGTTTTG 20 287 - 197 249 - G39751
Z10166 9 TTGAGCTGTGAACAAGCCAC 20 CCTCTTCATCTGGCATCCAT 20 103 113 161 199 - G39758
Z106 9 GAGACCGACCGTCTGCTAAC 20 TCCAGAGAACACCCTGCTG 19 NA NA NA NA - -
Z10789 9 ATGCATCACACAGCTGCAGT 20 GCGTTTCTCCCAGCTAACAG 20 165 - 161 179 - G39830
Z11672 9 ATAATCTGCTGCATCTCCCC 20 GCGAGTTCAAAGCATGACAA 20 ? - ? ? - G39943
Z11702 9 ACGCTCATGTCCATTCATCA 20 CTACAGAGAATGGAGCCCTG 20 ? - ? - - G39950
Z11781 9 ATTGTGCCTTGAGTGAGGCT 20 GAGGTGACTGCAACCGATTT 20 ? - ? - G41751
Z11785 9 ACCATCACGCCAAAATAACC 20 CAGATTCACACAGAGCGCAT 20 194 - 186 198 - G39957
Z1227 9 ACAGTGTTGACCTGCCGAC 19 GAATGAGCAGAAATCTCCGC 20 NA NA NA NA - G39985
Z1270 9 GCAGGTTTACAGCGCACTGG 20 GAAGAGTTCAGTAACACAAGTCC 23 NA NA NA NA - G41350
Z1273 9 TAGACTCAATGGGGGAGGTG 20 GTATGGTGGAAATCAAATGCG 21 139 - 135 137 - G41351
Z13213 9 TCGGCAGGGCTTTTCACT 18 GTTAGTCTCCTCGACGGCTG 20 ? - ? - - G41842
Z1322 9 GGACGCCTGTAAGGTCACAAA 21 AGCGGACCACCAGAGTCACC 20 151 225 161 185 - -
Z13221 9 CTGTTCAGCCACTGAAACACA 21 CTGCTCACCTGATCACCATG 20 152 - 104 - - G41843
Z13289 9 TATGGATGCCATTGTAGCGA 20 CATGGTATCCCACTGTTCCC 20 146 - 144 - - G40002
Z13450 9 CAGCCGTGTGTGGTCATTAG 20 AAATGCATCTGGAGACCAGG 20 ? - ? - - G40023
Z13486 9 CTTACTCTCGGCACCTCTGG 20 CCAGCCTTTATTCACTCTCTCA 22 240 268 184 208 - G40029
Z15447 9 AATGCAGATTGTCTCCCGAG 20 CATTGTGGGAATACAGGGTACA 22 NA NA NA NA - G41606
Z15449 9 GATAGCCAAGCGAGCTGC 18 TTGAAGGCAAGGGAGGAAG 19 145 - 143 - - G41098
Z1566 9 TCCATCCCTCAGCAGAGC 18 AAGGGTCTGGAAAACCGC 18 NA NA NA NA - -
Z1660 9 TGCCGAGCGCAGAAATAAAA 20 GAGGATATTTGGGTGCACCAAA 22 NA NA NA NA - G40132
Z1663 9 TGTAATGGGGTATCGGCTGC 20 GCGCAGGCAAACTGCAGTTT 20 NA NA NA NA - -
Z1777 9 TGCGCAAGACCTGGCTGGAC 20 TGGCTGCCTGCAGAATACAA 21 NA NA NA NA - -
Z1805 9 AGTAAAAATGGGGTGCGGCC 20 CTAAGGGCCGTGCCAGAGGC 20 NA NA NA NA - G41432
Z1820 9 AGCAGAATCCTGCCCATGAC 20 GCTGGAAAGGATCACCACCG 20 NA NA NA NA - -
Z1830 9 TTGCGACGTCTGGACGAGAG 20 CTGTGGCAACCCCGGATTAA 20 NA NA NA NA - -
Z20031 9 TGTCAGTGATCTCTGGGCAG 20 CTAACGCCCTGTCCTCAGAG 20 250 254 242 250 - G40148
Z20327 9 CTCCCATGAAACGGTCCTAA 20 ACCTTTCTTTTCTCATAGCTTATCA 25 284 302 276 298 - G40168
Z20860 9 TGCAGATATCCTCCACGTTG 20 CTCCACCTCAGGGTCATTGT 20 227 331 225 239 - G40206
Z21824 9 CTGTCGCCACACATACAGCT 20 TGAAGTTTTGGACCATCAAGAA 22 233 - 155 223 - G40273
Z22141 9 ACCATGGTGAATCTGTGCAA 20 CAGCTAATCACAGACCACTGGA 22 NA NA NA NA - G39445
Z22173 9 GCAGCTCACACTGACTGGAG 20 AGGTAAGAGCTGGAGCCGAT 20 143 181 145 191 - G40296
Z22682 9 GCTTTGTGCTTAGGGGAGTG 20 CCCCTAATCACAGGCATTTC 20 NA NA NA NA - G39510
Z3124 9 CGGCTCCACAGGAACATGAC 20 GCCGATGCCATTTTCTGTCC 20 135 - 131 - - -
Z3651 9 TGTTGGAGGAGTTGACCAGGTG 22 CAGATCCTGCCTGACCTGCA 20 164 - 142 - - G41458
Z3763C 9 CCAATTAACGGAAGTGAACCGC 22 GCACTGGATCAGTCCCGCTT 20 147 - 159 - Use at your own risk -
Z3784 9 TACGCTTGCAGTGTTTGCAGTG 22 ACGCCGTCTGGCATCAAACT 20 NA NA NA NA Use at your own risk G41465
Z4168 9 GTGGAGCATGCATATTCTCCCC 22 TTACACAGCGGAAGCCCTGC 20 NA NA NA NA - G41482
Z4229 9 AGTGATGACACCGCGTCTGC 20 GAACCCACAGGCCGTTAAACC 21 NA NA NA NA - G40356
Z4410 9 TGCATTCCTATCCATGTA 18 ACTAGAGGGCAGAACAGATC 20 NA NA NA NA - G40363
Z4544 9 AATTGGGTAGGCTAAGTTGCCC 22 AATCCAGGGTAACCACATTGGA 22 NA NA NA NA - G41521
Z4577 9 TGTGTGCACCTGACAGCAGG 20 GTAAAGAGCCTGCCTACCCACC 22 NA NA NA NA - -
Z4673 9 TGTGAGAGACCAAACAGGCAGA 22 TCTGCTGAGGCTTTGCAGTAAG 22 260 - 270 - - G41531
Z5080 9 AGAACACACACAGCGTGACCTC 22 ATGGGAAGAACACCCCCACG 20 95 - 219 229 - G41553
Z5394 9 ATCGTGCAGCCCTACTTTGTG 21 GACAATTTCCTGCCAAACAACA 22 NA NA NA NA - G41574
Z5564 9 CAGTGCTAACCACAGCACCACC 22 CAGCCCCAACAATTTGTCCC 20 235 249 229 239 - G41589
Z559 9 ACCCGGCTGTAGTGAAACC 19 CCTCTCTGCCCTCCTCTTG 19 NA NA NA NA - G40394
Z562 9 TGTACTTCTCTCTCAATACACCGG 24 AGGCCTCTGATTAACTGAATTACA 24 207 - 199 - - G41410
Z6268 9 ATCAAAGACTCGCACACGC 19 CCTTTCCACCCCTGACTGAC 20 255 - 215 285 - G40411
Z6336 9 GCATCAGTCTGCTCCGTGT 19 GAGGCTTCATTCCTGCTTTG 20 141 161 141 223 - G40424
Z6337B 9 TGCAGCGCATGACAGAGTAT 20 TGAACATCCCTCATTCCACA 20 - none
Z6430 9 AACAGAAGTGCCAGCATCG 19 GCTGTGTCACTCACACAAATG 21 210 - 194 242 - G40438
Z6574 9 AAGTTGCATTGGTGGAGAGC 20 TGTAATGGCATCATCCAGACA 21 112 122 114 150 - G40452
Z6663 9 CATCTTCATTGCCCAGCC 18 ATAGGAGCCCATCTGCACAC 20 156 - 162 164 - G41841
Z6845 9 TCACATAAGCAAGAGCGCTG 20 AGTCTTTGTCCCATTTCACCC 21 184 - 138 n - G41127
Z6846 9 TCTTCATCATGATTGACACACA 22 TGCAAAGCATCCTACAGAACA 21 114 130 140 172 - G41128
Z7001 9 TTCCACAGGCTGACCTTTCT 20 TCCTGCTTTGAGGACTGTTG 20 ? - ? - - G40491
Z7120 9 TGTGCTTGCTTCTTGGTTGC 20 TTACAGCCACGCACTCTCAC 20 264 - 234 254 - G41139
Z7144 9 AGAAGGTCCATGATTGACCG 20 CCGTGTTTAACGTACATCATGC 22 - G41140
Z7564 9 TGTCTGACATCACTGGTGCA 20 TCCATGCTCAGGTCAGACAC 20 153 - 163 197 - G40572
Z7807 9 TGACATCACTGTTGGGGAAA 20 GCAAGTCAGCTGACGGGTAC 20 230 234 228 - - G40592
Z7813 9 AATTCAATTAGGGCCAGGCT 20 ATGCGTGAACCATTACTGCA 20 NA NA NA NA - G39679
Z8233 9 TGGAGCAATGGAATACTGCA 20 CTTGCTTGATATTCCGGCAT 20 ? - ? n - G41166
Z8348 9 TTCACCCACAGACCTGATGA 20 TGGAGATCTGTCTCTTTCCCA 21 256 - 238 250 - -
Z8363 9 CCAGTAATGCCACACTGGG 19 TGTCTCATTCAGCGAGCG 18 149 183 199 211 - -
Z8505 9 TGGAGACCATTTCCATTTCC 20 ATCGTAAAGCCATGGGCATT 20 261 - 279 n - G40661
Z854 9 TCTTCTGAATCCTCACTCAGAGC 23 CCATAATGCATTTGGGGAAG 20 NA NA NA NA - G40666
Z8542 9 CAGGCTATGAGTGTGCTGGA 20 CAATTAGACGTGGAAGCGCT 20 259 - 219 - - -
Z9112 9 TGCTAAATAGGCTACGCTCTTT 22 CGAAGAAAAGGAAATTCTTCTG 22 233 - 211 231 - G40730
Z916 9 GGATCTGTTCAGCCACTGAA 20 TCACCTGATCACCATGCAGT 20 NA NA NA NA - G41427
Z9224 9 TGCATGAGTCCAGAGAAACTT 21 AGAGCAGAGCTGAGGACTGC 20 192 - 160 164 - G40748
Z9240 9 TGGACATGAATGGATACTGCA 21 CTCAGTTGACAACTGCATCCA 21 174 - 188 - - G41176
Z9439 9 GCCCTTTTTTCACATTTAAACG 22 AATTTAAGGCAAACGGGATATT 22 259 - 257 263 - G40796
Z9479 9 GGCATTCCCTTATCCCTGTT 20 TTGATTATTTGTTCAGATGCCA 22 135 137 131 - - G41183
Z9754 9 TGCTCTCAGCAGGTGTCTGT 20 GGTCAGTCGTCCTCTTCAGC 20 149 - 159 - - G40837
Z9923 9 CTCAAATCCAGTCATCCCGT 20 TCTGGGATCTCCAGAGGAAA 20 203 - 189 193 - G40864
Z9975 9 GCGCTCAATGCAGCAGTT 18 ACAGAGGAGACCAGGGGAAT 20 109 - 133 - - G41194
Linkage group 08LegendLinkage group 10

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Table generated Wed Oct 7 16:28:07 1998