Linkage Group 10 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.| Marker Number | Linkage Group | Forward (+) Primer Sequence | Length | Reverse (-) Primer Sequence | Length | AB_1 Size | AB_2 Size | In_1 Size | In_2 Size | Comments | dbSTS Accession |
|---|
| Z355 | 10 | CAGCCTGAGCACACAGAGAC | 20 | GCACAGGCCTAATAAGACGC | 20 | NA | NA | NA | NA | - | - |
| Z531 | 10 | GCAGGTTGCTCTGGTTTCTC | 20 | TTTCCGATGACAGATCGTGA | 20 | 118 | - | 126 | - | - | G41407 |
| Z744 | 10 | TATACTGCTTATTGGTGAAATCCG | 24 | CTGTACAGCCCAGACAAGAGC | 21 | 115 | 145 | 93 | 159 | - | G40556 |
| Z1145 | 10 | GGGAACGACCCTTTTCAATT | 20 | TCCAAGTTGGCATAGATGTATCT | 23 | 199 | - | 147 | 211 | - | G39911 |
| Z1296 | 10 | GCCTCATTTCTCTCGTACGC | 20 | TGGGTGGGCTGTTTCAGT | 18 | 258 | - | 250 | - | - | G41353 |
| Z1450 | 10 | AACGTGTGTTCAGGACAGTGGC | 22 | AGAGGGAAGGTCAGCAGGAAA | 21 | 238 | 250 | 206 | 220 | - | G41374 |
| Z3054 | 10 | GCTCAGTGGAAAAACAATGAAAG | 23 | CGCGCTTAAATCGATCAATGC | 21 | NA | NA | NA | NA | - | - |
| Z3260 | 10 | GCTGGTCTTCATCCCAGAATGG | 22 | TGGTCGGTGAGTTTTTACAGCC | 22 | NA | NA | NA | NA | - | - |
| Z3455 | 10 | GGGTGGGGTGAGGGCAATAT | 20 | AACGAGGCCAGTCAGTAATGGC | 22 | NA | NA | NA | NA | Use at your own risk
| G41446 |
| Z3835 | 10 | TCACCATTTTCACAAATTGGCA | 22 | AAATGGAGATTCCGCTAAAGCA | 22 | 122 | 132 | 230 | - | - | - |
| Z4738 | 10 | CACAGCGGATGCTCTTCC | 18 | GTATAGGGGAACTAAATCGGCC | 22 | 150 | - | 172 | - | Use at your own risk
| G41535 |
| Z6183 | 10 | TTCACATGTCTGGAATGGACA | 21 | CGCATTAATCTGGAGAGAACTG | 22 | 152 | - | 102 | 116 | - | G41800 |
| Z6195 | 10 | CACTGTCATCAACCCATTTCC | 21 | ACCTTTAGAGACAGAGGAGCAA | 22 | NA | NA | NA | NA | - | - |
| Z6346 | 10 | CTTCAGGAGTCGTCAGGATTG | 21 | TTATGAGCCACAATCTGGACC | 21 | 189 | - | 153 | 165 | - | G40425 |
| Z6390 | 10 | GGCCTTCGATCCAAAGATCT | 20 | GTGCCTATCGAGGAGTCGAC | 20 | 132 | 148 | 128 | 132 | - | G40430 |
| Z6410 | 10 | TCTGATTATTCTCACCTGCCG | 21 | ATCAAACACATCTGCTCCCC | 20 | 156 | - | 142 | 162 | - | G40431 |
| Z6427 | 10 | CATGCATGCACAAATGCAC | 19 | GTGCGCATTTTCAACTCTGA | 20 | 132 | n | 144 | 180
| - | G40437 |
| Z6648 | 10 | ATGTCCTCCAGGGAAATGTG | 20 | ACAGCCTGCAGAAAACACAT | 20 | 252 | 288 | 202 | ?
| - | G41801 |
| Z6754 | 10 | TTGAATGCTTCGTTTAGGAATG | 22 | CAGATCCCATGTGCAGAGC | 19 | 138 | - | 124 | 128
| - | G41124 |
| Z6992 | 10 | GTCCATGTAACCTTTGCATGC | 21 | ATTCATGTTTTGCTTTCCGC | 20 | ? | - | ? | -
| - | G41136 |
| Z7028 | 10 | CAACACCAGCATAGCCATGT | 20 | TGTGACAAGGTCAGTGGAGC | 20 | 151 | 237 | 147 | 207
| - | G40495 |
| Z7088 | 10 | TCAATTAAAGAGCCTGACGAG | 21 | AGTGTGTTTGTGTGCATTTGTG | 22 | 261 | - | 257 | -
| - | G41138 |
| Z7123 | 10 | TGTCAGTCCAGATGTGTAACGA | 22 | TCATGTTCTCCGGATCATCA | 20 | 277 | 283 | 269 | 275
| - | G40505 |
| Z7262 | 10 | CATGTGCCTGCGAGACAC | 18 | TTTTTCATTTGCAGGCAGC | 19 | 413 | - | 355 | -
| - | G41628 |
| Z7316 | 10 | GTGGACATTTGGGGTGAAAG | 20 | GAGGTTTTGCGCTGATGAAT | 20 | NA | NA | NA | NA
| - | G39653 |
| Z7388 | 10 | TCAAGGCAAAACATTAAGGTGA | 22 | CACCCCTGATCCACACTCTT | 20 | 264 | - | 228 | 234
| - | G40554 |
| Z7504 | 10 | AATTGGGCTGCGTTTCATAC | 20 | TTCCACCTCCTGTAACCTGC | 20 | 160 | 176 | 168 | 196
| - | G41150 |
| Z7558 | 10 | TGGCTCATCTGATATTGCCA | 20 | AGAAACAAACCGACCATTGC | 20 | 180 | - | 188 | -
| - | G40571 |
| Z7810 | 10 | GTTCTTCCTCTTTCCCCAGC | 20 | ATGAACACGCGTTCACTCAG | 20 | 161 | 171 | 161 | 163
| - | G41667 |
| Z8146 | 10 | AGCGGAGATGATGACTTGGT | 20 | TCCGCCTCTAGAGAGACTGC | 20 | 142 | 160 | 146 | -
| - | G40626 |
| Z8220 | 10 | CAGCATCAAATATTTGTGTGGG | 22 | CTTTTGCATACAATGCACATCA | 22 | 220 | - | 214 | -
| - | G41164 |
| Z8249 | 10 | CCAGTGTGTTACCGTGCATC | 20 | ACCGTGTCAGAGAGTCAGAACA | 22 | 197 | - | 183 | 227
| - | - |
| Z8318 | 10 | ATGCCACAACAATTGTTCGC | 20 | AAGAAAGCACGCGCACAC | 18 | 190 | - | 194 | -
| - | G40642 |
| Z8563 | 10 | TCTCTCCATCTGGGTTCCAC | 20 | CTTCGGAGGACGAGACAGAC | 20 | 206 | - | 214 | -
| - | - |
| Z8705 | 10 | CACTGCAAATGCCAATCATC | 20 | TCAGATGGTGAGAGCACAGC | 20 | 231 | 249 | 227 | 285
| - | G40678 |
| Z8988 | 10 | TCTGAGGAAAGAGGAGCCTG | 20 | CAGAACACACTCCGTCTCTCTC | 22 | 241 | 299 | 271 | 285
| - | G40714 |
| Z9096 | 10 | GCTGATCCCATCATGCTTTT | 20 | AATAAGGGACTAAGCCGAAAGG | 22 | 234 | n | 270 | n
| - | G40904 |
| Z9199 | 10 | GAGCCGCTTACATCTGAAGC | 20 | CTGCACGTCCACTCAGCTT | 19 | 186 | 232 | 184 | -
| - | G40746 |
| Z9208 | 10 | GTGCCGTGCTCTCACTCAT | 19 | CTGCAGACTGTCACCTGTGC | 20 | 159 | 201 | 171 | 191
| - | G41632 |
| Z9328 | 10 | CTTTCACAACATTTTCATTCGC | 22 | CCAATCAGGAACTGAGGGAA | 20 | 176 | 232 | 174 | 178
| - | G41179 |
| Z9413 | 10 | ACTTCCGTCTGCTGGAGAGA | 20 | TAAGCTACGGCCACTGCA | 18 | 219 | 221 | 217 | 219
| - | G40788 |
| Z9436 | 10 | AGACACACTCTGGACACCCC | 20 | GGAGGAACTCGCCATTTACA | 20 | 162 | - | 150 | 284
| - | G40795 |
| Z9473 | 10 | TGCTGTCTTCTGTCAGGAGG | 20 | GGAGCAGCTGGATACGACTC | 20 | 249 | 259 | 261 | -
| - | G40798 |
| Z9574 | 10 | CTGCTTCAACTGTGTCATGTCA | 22 | GGCCTCTGTTACATAGACATGG | 22 | ? | ? | ? | -
| - | G41186 |
| Z9701 | 10 | CACTGATGCTCTCACCTCCA | 20 | ATGCTTGTGTGGGTGTCTCA | 20 | 125 | - | 103 | -
| - | G40827 |
| Z10143 | 10 | ACATGCATGCTGAGAGCATC | 20 | CATCGCCGAGTCTGTCAGT | 19 | 137 | - | 159 | -
| - | G39754 |
| Z10251 | 10 | GCTCAAGGACAACTCCGAAG | 20 | CAGTAACACGGGGAAACGTT | 20 | 328 | - | 252 | 256
| - | G39768 |
| Z10279 | 10 | CTGATGTCACAGCGGAGTGT | 20 | AACATCCAGGTGAGCCAATC | 20 | 250 | - | 268 | 274
| - | G39773 |
| Z10384 | 10 | CCAATCAGGAACTGAGGGAA | 20 | CGGGACAGACTTGAGTGTGA | 20 | 208 | 262 | 206 | 210
| - | G39789 |
| Z10647 | 10 | TGCTGCAAAATAAAACAGTGTG | 22 | TGTGTTTGTGTTCAGCGTCA | 20 | 174 | - | 200 | 266
| - | G41702 |
| Z10765 | 10 | ATCCAGGTTGACAGACGTCC | 20 | GCGGGTAGAGCTGTATTTGG | 20 | 273 | 299 | 259 | 273
| - | G39827 |
| Z11229 | 10 | GCAGGAAAGCCAGAATGAAG | 20 | CACAAGACAGCGAACAGGAA | 20 | 114 | - | 136 | -
| - | G39879 |
| Z11602 | 10 | ACGCTTGAGCCTGAGACAAT | 20 | AGGATCCATTTGCGTGTCTC | 20 | 200 | - | 204 | -
| - | G39934 |
| Z11911 | 10 | AATCAGCCAGCTGCATCTTT | 20 | TATAAACGGCTCCCTTCCCT | 20 | 258 | - | 224 | -
| - | G41755 |
| Z13219 | 10 | CAAAAACAGCAGTATCCGCA | 20 | GGTCCCCATACAGCTGACAC | 20 | 200 | 214 | 178 | 184
| - | G41802 |
| Z13314 | 10 | CTCCAGCCAAAGAAAACGAG | 20 | GGAGGCTCAGACAGGTGAAG | 20 | 153 | 155 | 151 | 161
| - | G40007 |
| Z13632 | 10 | AGGATGATGAAGACGGATCG | 20 | TCGCCTGAGGTGAGTTTTTC | 20 | 262 | 264 | 306 | -
| - | G40049 |
| Z13685 | 10 | TCCAATGCACAGGTAAACCA | 20 | AATGAGTTTCAGTCCACCGC | 20 | 285 | - | 293 | -
| - | G40060 |
| Z13875 | 10 | CTCCCAAGAGCCGTACACTC | 20 | CAGCCTTTAATGGACACCGT | 20 | ? | ? | ? | ?
| - | G40082 |
| Z14193 | 10 | GCTGCTCATGCAATGGTAGA | 20 | GTGAACCTGACCGACCTGAT | 20 | ? | - | ? | -
| - | G40114 |
| Z15444 | 10 | GTCCCGCTGCTGATCTAAAG | 20 | TCCCCCGTCCTCTAAAGTTT | 20 | NA | NA | NA | NA
| - | G41096 |
| Z17219 | 10 | CCACAGTCCACCAAGACATG | 20 | GCTACAACACAGCTCGTGGA | 20 | 179 | - | 157 | -
| - | - |
| Z21976 | 10 | GCGCTCTTGTTTGACCTTTC | 20 | CCGCAGTGTCAGCAGAAAT | 19 | 101 | - | 105 | -
| - | G40279 |
| Z22422 | 10 | CCCTTGAGCAAGGCATTTAA | 20 | TCGGTATTGGCAAGTAAGGG | 20 | 218 | - | 174 | 202
| - | G40319 |
| Z22661 | 10 | CCTATGCACTTTGCCCCC | 18 | CATCAGGCATGATTCTGTGG | 20 | NA | NA | NA | NA
| - | G41722 |
| Z22928 | 10 | GGTGCAGAGTCATGCTTTGA | 20 | TTGTTCTGGTTGTGCTGGAG | 20 | NA | NA | NA | NA | - | G39528 |
If you have questions, comments or problems contact us.Back to IndexTable generated Wed Oct 7 16:28:07 1998