Linkage Group 11 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.| Marker Number | Linkage Group | Forward (+) Primer Sequence | Length | Reverse (-) Primer Sequence | Length | AB_1 Size | AB_2 Size | In_1 Size | In_2 Size | Comments | dbSTS Accession |
|---|
| Z6337A | 11 | TGCAGCGCATGACAGAGTAT | 20 | TGAACATCCCTCATTCCACA | 20 | 94 | - | 96 | 100 | - | none |
| Z685 | 11 | GGTGCTCGCAGGTGTTAATT | 20 | CCAGGGCGTGATGTACTTTT | 20 | NA | NA | NA | NA | - | G41415 |
| Z868 | 11 | GATCTCCCTAATTATAGCACTCGC | 24 | TCATCGCATCTGCAGTCAG | 19 | 128 | - | 114 | - | - | G41423 |
| Z1266 | 11 | GGTAAGAGAATCACGCGCTC | 20 | GAAACACTCGATGACATTCAATG | 23 | NA | NA | NA | NA | - | G39992 |
| Z1393 | 11 | AAGCCCATAATCTGAAAACAGC | 22 | TATACAAACAGGTACTGCTGCTCC | 24 | NA | NA | NA | NA | - | G41359 |
| Z1445 | 11 | CCATTTGTTTAAAAGTTTCCTA | 22 | CGTGAGTCCTCCACATCATGC | 21 | NA | NA | NA | NA | - | G41373 |
| Z1590 | 11 | CATGTGGCCACAGCAGAC | 18 | CAGAGCCAGAGCACTCCTG | 19 | NA | NA | NA | NA | - | G40130 |
| Z1653 | 11 | TCGATGACATTCAATGACAGCA | 22 | CGGGTAAGAGAATAACGCGCT | 21 | NA | NA | NA | NA | - | G41400 |
| Z3218 | 11 | TTTCACTTTCGGAGTTTGCATG | 22 | GCTGGAAGACTGGAAACATCCA | 22 | NA | NA | NA | NA | Use at your own risk
| - |
| Z3362 | 11 | AAGAAGCCCTGAGGACAACA | 20 | GCCATTGACTGTGCCTGAG | 19 | 152 | 166 | 168 | 232 | - | - |
| Z3412 | 11 | AGGCAAACAGAAGCATTTGGC | 21 | GGAAAGTCCAAGTACCTTGCGC | 22 | NA | NA | NA | NA | - | - |
| Z3527 | 11 | TTCTGGTGTTTTCCAGCGGA | 20 | GGCAGTTCGTCACCTCAAAACA | 22 | 286 | - | 220 | - | - | - |
| Z3714 | 11 | TGGCTGTGTTCATATGGTGTCC | 22 | CACAACGCCATCTGACCCAG | 20 | NA | NA | NA | NA | - | G40343 |
| Z3952 | 11 | CAGTTTCACAGCCGCATG | 18 | AGCAGCAGGTCAAACACTCA | 20 | NA | NA | NA | NA | - | G41473 |
| Z4190 | 11 | CCATGGAAAAGGCTGGTTATGG | 22 | TCCACGTTTCCAGGTGAAAATG | 22 | NA | NA | NA | NA | - | G41484 |
| Z4207 | 11 | TGCTCCCATCATGGCAAAGA | 20 | GGCTGGCTAATAATTCAGGGGA | 22 | NA | NA | NA | NA | - | G41488 |
| Z4221 | 11 | GTGTTCCTCTGGGAAACATCA | 21 | ACAGCAATGGCAAGTTTCTG | 20 | 218 | - | 226 | -
| - | G40355 |
| Z4353 | 11 | CGCATACATTTGTGCATGGTTC | 22 | TGGGGCCTCCTTCAAAATCA | 20 | NA | NA | NA | NA
| - | G41509 |
| Z6272 | 11 | GGATGGACAGTGCTAGTGAATG | 22 | CATTTGAGGACACTGACCAGA | 21 | 115 | 135 | 145 | -
| - | G40412 |
| Z6285 | 11 | TGATAGAATTTCCCATTGACCC | 22 | GACTGAGTGTGGACACCCCT | 20 | 349 | - | 319 | -
| - | G40414 |
| Z6682 | 11 | TCCAGAAGTCAGATGGAGAAGA | 22 | CCTGCTCCTCTCACTAACCG | 20 | 166 | - | 122 | 172
| - | G40460 |
| Z6909 | 11 | ATCAATGCCAACTATGTGGATG | 22 | TGGGTTTATTATAGCCCTGTGG | 22 | ? | - | ? | ?
| - | G41624 |
| Z6971 | 11 | GACCCTCAACAGCCAATTTG | 20 | TGGGAGTAAATGTTGCCCTG | 20 | ? | ? | ? | -
| - | G40486 |
| Z7022 | 11 | CTAAACATTCCCCTGCGGTA | 20 | CACGCAACACTGACGACTCT | 20 | ? | - | ? | -
| - | G41643 |
| Z7156 | 11 | GCAGTCAGAAATCCCAACAG | 20 | CTTAACTGCAGACCAGTGCG | 20 | 284 | - | 292 | 306
| - | G41141 |
| Z7247 | 11 | TTTTACAGCAATGCCTCGC | 19 | CAGCGGCCACACCCTTAC | 18 | 110 | - | 150 | -
| - | G40527 |
| Z7517 | 11 | TTTTCCATCGCTTCGCTAGT | 20 | TGCTCTACAACAGGGCTGTG | 20 | 214 | - | 196 | -
| - | G40565 |
| Z7657 | 11 | CTACAAATCCTGTCATGCACC | 21 | GATAAAATCTGCAAGGACACCA | 22 | 250 | - | 226 | -
| - | G41629 |
| Z7907 | 11 | AAACGGATCTGCAAGCAACT | 20 | TGTGTCAATTGTGGAATGTGC | 21 | 197 | - | 199 | -
| - | G40608 |
| Z8032 | 11 | TGTCAAACGTCAGAAACAAAGG | 22 | TGGCCTCTTTCATCAGCAG | 19 | 127 | - | 145 | -
| - | G41161 |
| Z8180 | 11 | AAGCAGACGGAGCAGGACT | 19 | TGAAGATTCTGTCAGTGCGC | 20 | 162 | - | 166 | -
| - | G41162 |
| Z8214 | 11 | TGCCGGAGTTGTTGTAAACA | 20 | AAACTGGCTCTGATGGGATG | 20 | 150 | - | 158 | 258
| - | G41195 |
| Z8449 | 11 | GCAGATCAGTGCTCATTCACA | 21 | TCCATGAATCACCTGGACTG | 20 | 304 | - | 262 | 276
| - | G40648 |
| Z8816 | 11 | AACGTGCACTTACAGCGATG | 20 | TCACACACCCCTGATCTGAA | 20 | 211 | - | | 233
| - | G40695 |
| Z9192 | 11 | GTGTACCTAATAAAGTGGCCGC | 22 | TGCACGTGTCTAATCATCATC | 21 | 105 | - | 101 | -
| - | G41175 |
| Z9239 | 11 | CATACACCCGAGCAATCATG | 20 | CAGCTCCGTGACATGACG | 18 | 142 | - | 136 | -
| - | G40754 |
| Z9567 | 11 | CTGACCTTTCCTCTGTTCGTG | 21 | TTCAGCTAAAGCACACCCAA | 20 | ? | - | ? | -
| - | G41185 |
| Z9873 | 11 | CCGATAACTGATCGATAACGG | 21 | ATGTATAAGTGTCTTGCTGCCC | 22 | 214 | - | 200 | -
| - | G40856 |
| Z9933 | 11 | AATGTGCTCCGTATGCATTG | 20 | GGCCTCTGATCAGCTCTTCA | 20 | ? | - | ? | -
| - | G40866 |
| Z10142 | 11 | TCTGTCTAGCACGTCATGGC | 20 | CCACAGCTGTAAACCGGAAT | 20 | 183 | 185 | 179 | -
| - | G39753 |
| Z10215 | 11 | ATATCCCGTCCTGCTCAGTG | 20 | TCAGATGTGCACAACTGCAA | 20 | 108 | - | 116 | 128
| - | G39764 |
| Z10464 | 11 | GGCCTAGTGCACAGAGAGC | 19 | TGGTTTCCTGAACAACCACA | 20 | 184 | - | 178 | -
| - | G39798 |
| Z10590 | 11 | GATGATAAGCATTAGGGATGGC | 22 | TGAATTGGATGAACTAAATTGGC | 23 | 296 | - | 312 | -
| - | G39812 |
| Z10680 | 11 | AGTCAGGTGAAGCTGAGCGT | 20 | GACTCAGTAGGTTTCGGGACA | 21 | 218 | 234 | 238 | -
| - | G39819 |
| Z10727 | 11 | TGCAGGAAACTGCTTTTTCA | 20 | TAATCCTGCTTGTGTTGGCA | 20 | 218 | 236 | 204 | -
| - | G39821 |
| Z10919 | 11 | CAGGACTCGCGAGAGTTGTT | 20 | GCAATGAGTCACAGAGCGAA | 20 | 83 | - | 89 | 97
| - | G39843 |
| Z11067 | 11 | TTGCTGTCTGACTCCAGTGG | 20 | GGCAACAAGTGACCCTCATT | 20 | 114 | - | 240 | -
| - | G39865 |
| Z11129 | 11 | CTTACAAAAGGCCCTTTCCC | 20 | AGCAGGAGAGCGATCCTTC | 19 | NA | NA | NA | NA
| - | G39007 |
| Z11160 | 11 | TGTTTTCCTGACCTGAATACTTGA | 24 | TAGCTCCTCAGAACCGCAG | 19 | 321 | - | 391 | -
| - | G39877 |
| Z11504 | 11 | GGCCTAGCAGGGTTTCCTAC | 20 | TGCAGAGTGATCTGGTGGAG | 20 | 253 | - | 235 | ?
| - | G41719 |
| Z11620 | 11 | GCATTCAGCAAATCCAACTG | 20 | TTCCCATCATCAGTTGGACA | 20 | 175 | - | 187 | -
| - | G39937 |
| Z11809 | 11 | AGCTGTGATATGCATCAGCG | 20 | AACAGCCCTGATCTGGTTTG | 20 | 136 | - | 194 | -
| - | G39960 |
| Z11865 | 11 | CTGATTCTCACGCCTGAACA | 20 | TCAATGCTCCAGCTCTCATG | 20 | 109 | - | 77 | 87
| - | G39967 |
| Z13244 | 11 | CCTGTAACATGTCTCCAAAACA | 22 | GCGTCACCAAAGAGTCCTATG | 21 | 197 | - | 201 | -
| - | G39997 |
| Z13320 | 11 | TAAGAGCGTAACGTGGAGCA | 20 | CACTCTGCTGACTCTGCTAGAAA | 23 | 115 | - | 111 | -
| - | G40008 |
| Z13395 | 11 | ACCAACCCTGAGGGAGTTTT | 20 | CCTTGCTACCGCTATGAATG | 20 | 149 | - | 119 | -
| - | G41760 |
| Z13411 | 11 | CCATCCGTCTTTCTGCTCTC | 20 | CCAGCTCTGTGTGTTTGGAA | 20 | 205 | - | 225 | 235
| - | G41761 |
| Z13666 | 11 | TGTATCGCAACATTACCCGA | 20 | CTGTGGGGCAATCCATAAAT | 20 | 275 | - | 303 | -
| - | G40055 |
| Z13935 | 11 | CAGGCACAGGCTTTCATACA | 20 | GTCCTGCATGGAGGATCAAT | 20 | ? | ? | ? | -
| - | G40090 |
| Z20004 | 11 | GATGCTCCGTGCCTAGAAAG | 20 | TATGCTTGTTTTGCTGTCGG | 20 | 286 | - | 290 | -
| - | G40146 |
| Z20709 | 11 | TTTGTGCTGCATTTAACCCA | 20 | AAACAGAAGTCAGGAGACTTGCTT | 24 | 162 | - | 138 | -
| - | G40196 |
| Z21025 | 11 | TCTCCACCAAAATAGCCAGC | 20 | GTTCTTGCCCCGTTATCCTT | 20 | 147 | - | 129 | -
| - | G40217 |
| Z21385 | 11 | GGGTCAGCAGGACACCTG | 18 | CCAAACCCAAAGTGAGAGGA | 20 | 186 | - | 178 | -
| - | G40245 |
| Z21428 | 11 | AGTGTCACCCAAACGTGACA | 20 | CAGTGTCCAGCGCTACAAAC | 20 | 93 | - | 95 | -
| - | G40249 |
| Z21618 | 11 | AGAGGAGGAGCGTGACCTTC | 20 | TGAGCTCAGCGTTTCTCTGA | 20 | 190 | - | 192 |
| - | G40263 |
| Z22038 | 11 | AGCAAGTGTTTTGTGCCATT | 20 | CTGCGATATGGAACATCCCT | 20 | - | - | - | -
| - | G40284 |
| Z22084 | 11 | ATGAAGTCCTGGCGTGTTTC | 20 | TTTCCTGAGCTCTCCCAAAA | 20 | 280 | - | 262 | 296
| - | G41767 |
| Z22206 | 11 | ATCAAGCGTCTGAGGGTGAC | 20 | TCTGCTTTATTCGGTAGCCC | 20 | 154 | - | 176 | -
| - | G40299 |
| Z22355 | 11 | ATGCTCTTCAGATTTGCCGT | 20 | CCCCAGCACAAACACAGATA | 20 | 154 | - | 168 | -
| - | G40314 |
| Z22552 | 11 | CTCCGGCTGAACTTTCACTC | 20 | AGTGTGTCCATCAGCATCCA | 20 | NA | NA | NA | NA
| - | G39490 |
| Z22766 | 11 | ATTTATTTATCGAGGCCGGG | 20 | TCCTATTTTAATCCACTGGCC | 21 | NA | NA | NA | NA | - | G39517 |
If you have questions, comments or problems contact us.Back to IndexTable generated Wed Oct 7 16:28:07 1998