Linkage Group 12 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z10457B 12 ATATTTCTCCGGTGGTGACG 20 GCCAAACACACACAGATTCG 20 NA NA NA NA - none
Z247 12 GATTTACCTGTTTCACAGCATCC 23 CATCCTGAGATGTCATCTGATAGA 24 NA NA NA NA - -
Z937 12 AGAGCTAGCGCTGAGCTAACA 21 TCTCTCTGTTCATCAGCAGCA 21 NA NA NA NA - G41429
Z1141 12 TCTGTCCTGTGCGCAGAG 18 AGTTCCAGTGCAGACGGTG 19 138 - 130 140 - G41326
Z1146 12 ATGCCACCCCTCTCCTTC 18 TGCCAACATGCTAACAATATCC 22 144 - 138 142 - G39915
Z1176 12 GAGGATTTAATCATCATTTGCTCC 24 AAACACCACGATCAGCAGC 19 NA NA NA NA - G41333
Z1179 12 CAGGGAACCGTCACATTCAGC 21 TCTGCAGACTCCCACTGACCC 21 NA NA NA NA - G41334
Z1225 12 CGAGCCGATAATGAATATACAGC 23 CCACCGTGACACCCTTAATT 20 NA NA NA NA - G41343
Z1312 12 AGGACAACACCTGCAGCC 18 TGGGATGAGCTGAAGTTCCT 20 139 181 139 - - G39996
Z1358 12 TAATGACAGGCTGCACATCTG 21 GGAGCAGGGTCTGAGGGT 18 NA NA NA NA - G41357
Z1365 12 GCAACCGTTGTGGTGTCC 18 CTTCCAGAGCGCTGTCCC 18 NA NA NA NA - -
Z1400 12 CCGCTGTACGCCTTACATG 19 AACCTGTAGAGTCCTCAGCCC 21 89 - 93 - - G41361
Z1473 12 CAACTGGAAGGGCACGAG 18 ACTAAACTGGACTAGTTTGCC 21 196 210 192 - - G41849
Z1778 12 AAGCTGGCGTGAAGAATATTGG 22 CAGGAGTTGATGCCAGCGGG 20 NA NA NA NA - -
Z1804 12 TGCATGGCCGTGTTCGTAAC 20 TGCTCGACCTCTGAGCCTTT 20 NA NA NA NA - G40143
Z3321 12 AATACGCAAACCGTGAGGAC 20 TGATCAGTGTCGTAAACCTTGA 22 NA NA NA NA - G40334
Z3467 12 ACTGCGTCACCTGTATGCCTG 21 TCTGGGGACTGATTCACAGGTG 22 143 - 159 167 - G41447
Z3690 12 AAGCCATTCCTTCCATTCTTCA 22 CCCCACAATTAAAGCTGACAGG 22 156 - 182 - - G41460
Z3801 12 GGTGCTTGTCACATTCCTGCA 21 AGGATGGATGTGAGCCTCTTGC 22 183 - 179 209 - G41466
Z4147 12 TCAGTTTGGACTGAGGAGCGC 21 TCAGCACTACAGGGACAGCAGG 22 NA NA NA NA Use at your own risk G40353
Z4188 12 GTAGTTGAATGCCGAATTGGCC 22 GAACACCTGCGCATCCACAG 20 207 - 203 - - G41483
Z4259 12 ACCACGCTTTTTGTGGACTCTG 22 AGGGGGGAGAGCATGCTAGG 20 NA NA NA NA Use at your own risk G41491
Z4325 12 GAATCACGACTGGCCATCTGG 21 GGAGCCGTGGAGCCTACAGA 20 129 - 135 NA - G41505
Z4373 12 AGCTTTGAAATTAGAGCG 18 ATGAGTCAATGTTCTGCTC 19 NA NA NA NA - G41511
Z4397 12 TTGAGGGGAAACAGAAGCAACC 22 TCACCCGATTTCCCTAACATCC 22 298 - 234 - - G41515
Z4499 12 AAAAGGAGCCATGTGGCAGC 20 ACGGCTTGACATGGCACTCA 20 NA NA NA NA - G41519
Z4568 12 TCTCATTCAGACACTCCGGCC 21 CCCTTCAGCCGGCATAGAAA 20 NA NA NA NA - G41523
Z4634 12 CGCAATACTGAAACACAGCAGC 22 AACGGGTCAGTTTCAGAGAGGC 22 NA NA NA NA - -
Z4830 12 TGTTTCCTTTTGCCTGTATGG 21 TTTGGGGCAATAGGTGAAAG 20 162 - 176 288 - G41540
Z4847 12 GTTGGCGGTTTATTCCGCTG 20 TGGTTCCCGCACATGACAGT 20 NA NA NA NA - G41541
Z5179 12 CTGAGCTGATGCTGGAGCCG 20 CGTCCATTCGCAGAGCGGCT 20 NA NA NA NA - G41559
Z6264 12 AACCACTCCATAAGCGTCTCA 21 ATTTAGAGGCACATCTTCAGCC 22 209 - 263 305 - G40410
Z6442 12 CTCGTCGTCACGTAGCATGT 20 GTGAGAACATGGTCTGAGATGG 22 127 - 123 145 - G41615
Z6691 12 AAGGTCAAAATTCTAAATTGACTGG 25 TGTGTAAGTGTTTGGCAGGG 20 145 157 143 159 - G40461
Z6762 12 TCACAATCATTATCCGTGTGTG 22 GGAGTGGAGTTGCTGTCACA 20 148 - 206 ? - G39603
Z6920 12 ATCAAGGTGAGTATGCAAAGGT 22 CAGCCCCGAATGTAATGC 18 224 - 200 228 - G41133
Z7042 12 CTGCCCTCTAGAGGTGATGC 20 GCCGACAGCAATATCTGAATG 21 178 - 114 200 - G40496
Z7135 12 ATGCCAGAACCCTCAACAAG 20 ATGCTGCTGTTTGTGTCAGG 20 231 - 197 259 - G40508
Z7136 12 TGCTGAACTGTATACCTGATGCT 23 AACGTCACGCTGTTCATCTG 20 170 - 194 - - G40509
Z7328 12 AAAGACTCCTGTGTGTGTTCAGTT 24 TTTCCAGAGGTCAGGAAACG 20 195 - 141 351 - G40541
Z7409 12 TGTATTCTGGACACTCGTCTGG 22 TCCTTAGCACATCTGCATGC 20 ? ? ? - - -
Z7576 12 AATGATGAAGGTCACCGCTC 20 TCCCTTTCCCACAGTCTGAC 20 188 - 124 176 - G40575
Z7834 12 CAAACACTCTCTAGAGGAAGAACG 24 GCCCTGCACTCCCAATAAAT 20 281 - 217 245 - G40598
Z8254 12 TGTTTGGTTTCATTCGTCGA 20 TGGTGTATTACAAACAGGAGCG 22 246 - 240 252 - G40639
Z8344 12 GTCCCCAAACGGGATATAGG 20 TGTTTCTCCACTCCTCCTTCA 21 144 152 148 174 - -
Z8377 12 TGTTGTCAGGTATGAATCTGCC 22 TGACAGGTTCTCTGTGGTGC 20 106 - 130 - - G41803
Z8450 12 GGCTGAATGATATCGCGAAT 20 ATTTTGTCAGCCAAACCCAG 20 197 - 231 281 - G40649
Z8460 12 TGGTGGTGTGGAAAATTTCA 20 ATGACCAACCGTGAGGAAAG 20 224 - 188 254 - G40652
Z8464 12 CCGCTGCATATATGAGGGTT 20 GTGCCAAAGGCAAATATTCG 20 NA NA NA NA - G40653
Z8755 12 GCATTTCTGGTCCTTTGAGC 20 TGCTGTTTCACACTGTTGCA 20 83 - 117 123 - G40684
Z8886 12 CTGCAGCCCTTGTCTAGACC 20 GGGTCTTTACACACTGGCAGA 21 94 - 106 116 - G40703
Z8947 12 AAAGTGTCTCTCAGGATGCCA 21 GGCCTAATCACTCCTGTACTCAA 23 NA NA NA NA - G40708
Z9021 12 TAAAGCAGGGATCCCATTTG 20 CCAGCTGGGACTTGAACCT 19 242 - 256 268 - G41804
Z9061 12 GTCCCCAAAATGCTTCTTGA 20 TCATGCATGTTTAGGACGGA 20 370 - 300 - - G41171
Z9114 12 ACAACTCAGCGTATTTTAGCCC 22 GCCATGAGAACAGAGGAGGT 20 150 - 164 - - G40731
Z9172 12 TCCTCCGAGTGCTCTGATTT 20 GAAACACCCATACATCCTCACA 22 134 - 136 142 - G41174
Z9251 12 CAAAGGGACTGAGCTGAAGG 20 GCCTCATTGATGAATATTCCTG 22 154 - 160 172 - G40757
Z9416 12 GCTGATCCGATCATGTCCAT 20 AATTTGTGAAGCGGAAGGTG 20 NA NA NA NA - G40969
Z9557 12 AGCTGTTCCAGAGCAGCATT 20 CCCCATGATTGACAGAAACC 20 ? - ? - - G40809
Z9596 12 CAGCTGCTGATGTCCTCCTT 20 AGAAGCGCTGAAGCATGACT 20 ? - ? ? - G40816
Z9891 12 GCATGGTTGAATGCATTTGA 20 ATGCTGTTGTGCTCTGCATC 20 ? - ? - - G40859
Z10122 12 AATTGTGGCACAACTGGACA 20 GCAGAGAATTAGCGGGTTTG 20 254 - 314 - - G39749
Z10225 12 CAATAGGAAGAGGAAGCCCC 20 CGCGATTATCATCAAGCATG 20 117 - 99 - - G41708
Z10352 12 TGGCTGACAGGAAACACAGA 20 TACCATCGCTGACAATCGAG 20 176 - 174 - - G39783
Z10364 12 TACGTGGGCGATGATGTAAA 20 GGCAGACCCCTCACTGTG 18 169 - 175 189 - G39786
Z10445 12 TTCCGGACCCTGTCAGTG 18 CACCTGACCGGGAGAGATAA 20 182 - 142 158 - G41696
Z10601 12 CCAGAATTCATCGTTCACTGTT 22 TGCACTGATCAGATGAACTGG 21 144 - 136 158 - G39813
Z10684 12 AGATTTGCTTTGGCAGTGCT 20 ACAGCACTTCACAGCAGGTG 20 260 - 266 360 - G39820
Z10806 12 GACGAGCCTCTGAGGAGGAT 20 ATTTACCCTCAGGCGCTTTT 20 239 - 205 213 - G39832
Z11079 12 GTGGTCAGCATGGAGAGACC 20 TACTGCAGGGGTTGAGCTCT 20 232 - 210 - - G39866
Z11124 12 GACACTCGGGTGGGCTTATA 20 TGTTGGAGAGAGTGTGGCTG 20 149 - 147 157 - G39873
Z11136 12 TGTTGATGCTTTCTCAACGG 20 GCCTGTGTTCTTGTTTTGAAAG 22 196 240 200 236 - G41713
Z11518 12 GCACCGACAGACAGCTCAT 19 GAAAACACCAACACACGCTG 20 140 - 160 168 - G39924
Z11521 12 TGCAGTTCATATGAGCAGGG 20 TTTGGCCCTTCAGAGTTGAG 20 253 - 207 237 - G39925
Z11549 12 TCTTACCGGAGCAACTGCTT 20 TCGAAGTGACACAAAAGAGAGC 22 145 - 167 183 - G39930
Z11611.1 12 AAAAACACAATGGCTCCGTC 20 CCTGAGAGGAGTCTGATGGC 20 197 - 149 299 - none
Z11782 12 GAGAATCAGAGCCGCATTGT 20 AGACGCAAACCAAGAGCAGT 20 178 - 146 - - G39956
Z11903 12 TGATGGGTTGAGCACTGATT 20 GCTCTGGTCTGGTTCAGGAG 20 227 - 205 215 - G39972
Z13218 12 TTGATGACGCTCTGATCCTG 20 TCTGCTGACCTTGTGGTCTG 20 237 - 215 247 - -
Z13252 12 GTTGGGTGTAGGGGTAGGGT 20 TCCTCAAACACCAACAGAAGG 21 224 - 218 228 - G41092
Z13276 12 GGGTGTTTTCCAGTGATGCA 20 GCACTGTTTGCTTGCAAAGA 20 159 - 169 - - G39999
Z13675 12 GGATCCTCCAGCTCTGCTAA 20 AGCGCTGATGCTGCATATAC 20 173 - 173 181 - G40057
Z13938 12 GCACAGGAGACGCACAGTAA 20 GAGATCAGTGACATCGCCAG 20 ? - ? ? - G40092
Z20142 12 TTGGTGCACAGGAACTTCTG 20 ACTCCTCCAGCACCCACCTA 20 199 235 217 339 - G40160
Z20406 12 CAATTAACACCGAGGCCTGT 20 TGTGCTGAAGCAGCAGAGAT 20 167 - 163 175 - G40171
Z21271 12 TCCACAGGGCAATATGAAGA 20 CAGACAGAGGAGCAGCAGTG 20 216 - 194 202 - G41741
Z21677 12 AACGTAAAGCCTGTTTTCGC 20 ACCTGCCACTTCAGCAGTTC 20 134 - 126 128 - G40266
Z21911 12 ACCGAGACAGGGAGGATTTT 20 CTCCTCAGTTTTGTCCCAGC 20 207 - 219 287 - G40278
Z22103 12 AGCTTTCAGAGGAGGATGCA 20 TGTTGCCATGAGAGGAATCA 20 186 - 176 262 - G40291
Z22333 12 TGTTATTCTGCTGTCGCCTG 20 CTGCAGGTAGCCAGAGTTCC 20 193 - 181 187 - G40312
Z22369 12 CTCTGCCATGAGATCATCCA 20 TTCAAAACCCTCTCCATTGC 20 170 - 164 178 - G40315
Z22518 12 AGCAAACACCAATCGTTTCC 20 TGGAAGTGATCAATTGGCTG 20 206 - 204 216 - G40325
Z22666 12 CATGGGGAGCAGAGAGAGAC 20 GAACCAGAATCCTCTGCTGC 20 NA NA NA NA - G39507
Linkage group 11LegendLinkage group 13

If you have questions, comments or problems contact us.

Back to Index
Table generated Wed Oct 7 16:28:07 1998