Linkage Group 13 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.| Marker Number | Linkage Group | Forward (+) Primer Sequence | Length | Reverse (-) Primer Sequence | Length | AB_1 Size | AB_2 Size | In_1 Size | In_2 Size | Comments | dbSTS Accession |
|---|
| Z28 | 13 | TCTGGTGGACTCGCTGAAG | 19 | AAGTAAGCGCCACCAGAGTG | 20 | 141 | - | 121 | - | - | - |
| Z818 | 13 | CATGGCTTTACTGCTCTGAGC | 21 | CTTGTGCTCAAACTGAACACTG | 22 | NA | NA | NA | NA | - | G40629 |
| Z1412 | 13 | TCAAACTGCGGCTCTGTTTACA | 22 | AAGTGCTTTAGCTGGACGAGGC | 22 | 219 | - | 225 | 235 | - | G41367 |
| Z1496 | 13 | CCTGAGCTTCATCCAGAGCTCC | 22 | CTTCAGTTTACAGCAGCGCTCG | 22 | NA | NA | NA | NA | - | G40118 |
| Z1531 | 13 | CATCAGCACTGTGCGTACCT | 20 | CGCTGCTGCCTTCTGTCT | 18 | NA | NA | NA | NA | - | G41388 |
| Z1627 | 13 | GCACATTTGTGTGGTGCTGTT | 21 | CCACCCGATATATTTGCCAAC | 21 | NA | NA | NA | NA | - | G41393 |
| Z1774 | 13 | AGACGGAGTTAGCGCTGCTC | 20 | CGTTCCACAAGCTCAGGGCT | 20 | NA | NA | NA | NA | - | - |
| Z1826 | 13 | CGCCACTGTAACGCCACTATAA | 22 | TTGAAGACTCCAGAGCCACAAA | 22 | NA | NA | NA | NA | - | - |
| Z3424 | 13 | CTGAAATCCCATGCGATAAGGC | 22 | ATACCCTGCTGACCAGCGGA | 20 | 217 | - | 229 | - | - | - |
| Z3626 | 13 | GGCAGAACAGCAGGACGGAT | 20 | CAGCGGGAGGTGTATGGAGG | 20 | NA | NA | NA | NA | - | G41455 |
| Z3664 | 13 | CTCCGCTCCGGTACAGCACT | 20 | GATCTCAGAGCAGCCGACAGC | 21 | NA | NA | NA | NA | - | G40340 |
| Z3969 | 13 | CCCGCAGCCTTTCAGACACT | 20 | AGTGACAGGCGCGCTCAGAG | 20 | 203 | - | 185 | 329 | - | G40352 |
| Z4076 | 13 | ACTGACCCACAGCTGGTCTGG | 21 | TCTCAGTCGTCATTCCAGCTGC | 22 | NA | NA | NA | NA | - | - |
| Z4252 | 13 | TGTGCGTTTGCAGTGCTCTG | 20 | GGTACTGCTGCCGCTGGACT | 20 | 120 | - | 124 | 154 | - | G41490 |
| Z4285 | 13 | TGCATGATATCCCACAACCCC | 21 | GACCCTCCCCCTATCTGCGT | 20 | NA | NA | NA | NA | - | G41495 |
| Z4583 | 13 | TTGCTGCCATGTGATTGGCT | 20 | TTTATTCCTCTGTGGTGACCCC | 22 | NA | NA | NA | NA | Use at your own risk
| - |
| Z5188 | 13 | GCCCAAAGACATGCGCTATAGG | 22 | GCTGGAAAGTGGTATGGCCG | 20 | 97 | - | 101 | - | Use at your own risk
| G41562 |
| Z5395 | 13 | CAGCCCCCTCAGTCACGACT | 20 | CGCGCCCTCTCTGAGAACAT | 20 | NA | NA | NA | NA | - | G41575 |
| Z5608 | 13 | TGCCTAATGGAGGACGGCAT | 20 | AGGTGAGCACAGGCTTGAATCT | 22 | NA | NA | NA | NA | - | G40395 |
| Z5643 | 13 | AGTGGAGTTGACCAGCTGCTTG | 22 | CCCCAGAATTAAAACTTCGCCA | 22 | NA | NA | NA | NA | - | G41593 |
| Z6007 | 13 | AGCCCTAAACAAACCGGC | 18 | GAGCATGATCTGCTCGTTAGG | 21 | 130 | 134 | 128 | 134 | - | G41805 |
| Z6104 | 13 | TCAGACTTCTGTTTGCCCG | 19 | CATGTGCCTATTGCCAACTG | 20 | 116 | - | 110 | - | - | G40404 |
| Z6259 | 13 | CAACTGAGCGAGGTGTTTAGC | 21 | GTGGATGATTGGCTAGTGAAC | 21 | NA | NA | NA | NA | - | G40409 |
| Z6622 | 13 | CAGTGGAGGCTCTGGCAG | 18 | ATCATGCTGGAGAAACCCTG | 20 | 250 | - | 254 | - | - | G41620 |
| Z6657 | 13 | TGTGTCCCAGCAATCATTGT | 20 | GGATCACATGTGCGATGAAG | 20 | 129 | 161 | 145 | 159 | - | G41806 |
| Z6726 | 13 | GATGTGCATCTGCTGCTGAT | 20 | ACTGTTCAGCCAGCAGGTG | 19 | 186 | - | 236 | 260 | - | - |
| Z6745 | 13 | GAGGTGCATTATAGCCTGTTCC | 22 | AGATGTGAAAGTCCATGCTGG | 21 | 238 | - | n | - | Use at your own risk
| - |
| Z7102 | 13 | AAGCACCAAGCAAGCAACA | 19 | GAGGATGGATGCGATAAGGA | 20 | 236 | n | 248 | 270 | - | G40499 |
| Z7825 | 13 | CACCAGCAAAAATCATCGC | 19 | GGATGCGGGAAAACACTG | 18 | 245 | - | 167 | - | - | G41668 |
| Z8051 | 13 | TGGACAGAAAAGATCAGGGG | 20 | GCCCCCTTGAAACTCCTG | 18 | ? | - | ? | - | - | G41673 |
| Z8317 | 13 | ATCATTCTGCTGTGGTTACCG | 21 | ATCTCTGGACGCTGCACAC | 19 | 227 | - | 233 | 255 | - | G40641 |
| Z8356 | 13 | AACAGGGGGGCAAATAATTC | 20 | GTTCCACACAATCGACATGTG | 21 | 208 | - | 162 | - | - | - |
| Z8617 | 13 | GAGCCTGCGGTCATCTACAG | 20 | CCGCTTCTGTTTTATTCCCA | 20 | 229 | - | 203 | 215
| - | G40672 |
| Z9049 | 13 | TTAATCCCCCTCAAGTGCC | 19 | CTCTCTTGTCGACGAGGGTC | 20 | 217 | - | 219 | -
| - | G41170 |
| Z9110 | 13 | GCTGAGAGCCCCTATGACTG | 20 | ATGAGAGCTGTCACCGCAC | 19 | NA | NA | NA | NA
| - | G41172 |
| Z9289 | 13 | TGCACTGAAGCAATCTAATTTG | 22 | CAATTGTAAGCTCCAGTCAGG | 21 | 185 | - | 175 | -
| - | G40763 |
| Z9357 | 13 | ATGGTTACGGTGCAGGAGAG | 20 | CTCCCTGAGCCAGTTCTGTC | 20 | 277 | 303 | 247 | 265
| - | G41647 |
| Z9365 | 13 | TTCATCTGAAGCACAGGTGC | 20 | GCCAAACCTGCAATGAGC | 18 | 260 | - | 290 | -
| - | G40776 |
| Z9379 | 13 | AGGAAGCTCGTTCACAGGAA | 20 | GGAGCGGATGAGGAGATCAG | 20 | 175 | - | 173 | 179
| - | G40780 |
| Z9423 | 13 | GGGACAGAACCAAAGGAACA | 20 | GTTGCAGTTGCTGTGCAAAT | 20 | 265 | - | 259 | 313
| - | G40792 |
| Z9564 | 13 | TTCACCCAAACAGAAAAGGC | 20 | GCTGGGCTGGGCTAATATTT | 20 | ? | - | ? | -
| - | G40810 |
| Z9639 | 13 | CACAGCGCAGAGTCTGTCTC | 20 | TGTCACATGATCCTGCAGAAA | 21 | 158 | 258 | 218 | 226
| - | G40819 |
| Z9868 | 13 | CGTGTGTGAGAGTTTTGGGA | 20 | TCAAAGCCTGTTCACAGTGC | 20 | 184 | ? | 178 | 186
| - | G40851 |
| Z9878 | 13 | ACATCCACACCGTCTGTCAA | 20 | CACGTCATCAAGCAGAGGAA | 20 | ? | - | ? | -
| - | G40857 |
| Z9911 | 13 | GTGTCAGTTCCCATCCTCGT | 20 | GTCAGAGCCCACAGGTTGTT | 20 | | | |
| - | G40861 |
| Z9951 | 13 | GGATGCCAAACCTTTCCATA | 20 | GCTAACAGCCCTGGAGGAG | 19 | 198 | 200 | 234 | -
| - | G40868 |
| Z9963 | 13 | CAGGACACTCGGAGGAGTTC | 20 | ATCTGCTCCAGCGCTGTTAT | 20 | | | |
| - | G40871 |
| Z9995 | 13 | CATTATCCGGGTCTTATCTTCG | 22 | ATGGGTTGTAGATGTGATTTGC | 22 | 252 | - | 224 | -
| - | G40877 |
| Z10070 | 13 | CGTCAACTGTTTGGCCTTTT | 20 | TGTGATGAGGCGAGAAGATG | 20 | 179 | - | 103 | -
| - | G39747 |
| Z10362 | 13 | GGTGACCTCATGGAAGCATT | 20 | AGCTACTGAAACCCTTTGGC | 20 | 142 | 166 | 148 | 158
| - | G39785 |
| Z10488 | 13 | CAGCACAGTATGTCGTTCCC | 20 | CGACAGGAGACAGCTGAACA | 20 | 116 | - | 118 | 170
| - | G38935 |
| Z10513 | 13 | TTCCAGAACAATCGTTTGCA | 20 | GCCGAGTGTGAAAACAGCTC | 20 | 239 | 279 | 249 | -
| - | G39803 |
| Z10582 | 13 | CCTGTTTGCTGACACTCGAA | 20 | CACCCCGGTCTCTTAACAAA | 20 | 245 | - | 233 | -
| - | G39811 |
| Z10908 | 13 | CTCTGATCATGGATGTGGGA | 20 | TTCACACACTGGTAACCCCA | 20 | 263 | - | 237 | 267
| - | G39841 |
| Z10963 | 13 | TTCGCAGTAAATAAACCGCC | 20 | CGCGTGGGACAAGAATATTT | 20 | 165 | - | 151 | -
| - | G39851 |
| Z11423 | 13 | TGCCAGGCAACATATTCAAA | 20 | ATCCCATGGTCATTGCAATT | 20 | 202 | 278 | 156 | 196
| - | G39909 |
| Z11459 | 13 | GAGTGCGAATGCATGAAGAA | 20 | TGAACTTCTGCTTCCACACG | 20 | 188 | 196 | 208 | 210
| - | G39914 |
| Z11536 | 13 | CTCCGCATTACCCATCATCT | 20 | ACACAGCACAGCAGAGGTTG | 20 | 297 | - | 353 | -
| - | G39927 |
| Z11695 | 13 | TTTACACTGCGCTATTGTCCC | 21 | TGATGACAGACCCATCAGGA | 20 | ? | - | ? | -
| - | G39947 |
| Z11696 | 13 | TCACACATTGTCAATTAAAAAGCA | 24 | GGTGAAGAGCGGAGTCTTTG | 20 | ? | - | ? | ?
| - | G39948 |
| Z11918 | 13 | TGCTCCTCAACTCTAAAGAGAGA | 23 | TTTGATTGGTCAGCGTACCA | 20 | 203 | 227 | 225 | -
| - | G41757 |
| Z13250 | 13 | GCTGACAGCGGACTTAAAGG | 20 | CCAAGATCTCTGGAATCCCA | 20 | 217 | - | 227 | -
| - | G39998 |
| Z13571 | 13 | TAGCCCACATTCTCTGCAAA | 20 | CAGCTGCCAGCTTAACACAG | 20 | 226 | 274 | 258 | -
| - | G41765 |
| Z13611 | 13 | GAAACCAAACGAGATCGGAA | 20 | TGCATCTAAGATCTATAGCCTTTG | 24 | 255 | - | 197 | -
| - | G40043 |
| Z13682 | 13 | ATGCTGGATTAGGATGCCAG | 20 | TCGAACTCACTTTCACACATCA | 22 | 141 | - | 147 | -
| - | G40059 |
| Z15438 | 13 | CACCGTGTTTTGTCATTTGC | 20 | GAGAGCAGAAGACTCATTTGCA | 22 | 187 | - | 189 | -
| - | G40123 |
| Z15455 | 13 | TTCAGGAGGCACACGTCTC | 19 | TATAAACCTTGTGCCAGTGGG | 21 | 254 | - | 350 | -
| - | G40124 |
| Z17223 | 13 | ACAAACGGTTTTGTTCGGTC | 20 | ACTCATGATTCAACTGTGCCC | 21 | 139 | 145 | 151 | 201
| - | G41608 |
| Z17233 | 13 | AATCGACAGCATTAATCACACG | 22 | AAAACAAAGTCAAATTGGCAGA | 22 | 169 | - | 193 | 205
| - | G40137 |
| Z20088 | 13 | CCATCACAGCTGCTCATTCA | 20 | CCAGTCATGGTTTTTGTCCC | 20 | ? | ? | ? | ?
| - | G40156 |
| Z20208 | 13 | GGCATTCATAAACATGTCGG | 20 | TTTAAGGCTGTCTCGCCAGT | 20 | 194 | - | 258 | -
| - | G40165 |
| Z20379 | 13 | CCTGTTGTAACTTGCCCGTT | 20 | GGGAACCACACTTGGGTATG | 20 | 173 | - | 169 | 171
| - | G40169 |
| Z20429 | 13 | TTGGCAAAAACAGTGGTTGA | 20 | GTGATGGAGAGGTGGGACAT | 20 | 255 | - | 243 | -
| - | G40175 |
| Z21403 | 13 | TTGCAATGTTGCATCAGGAT | 20 | TTTGGGGAGAAATGGAGATG | 20 | 252 | - | 244 | -
| - | G41743 |
| Z21436 | 13 | AGGGCCTACGAGGAGTACGT | 20 | GCCTTCAGGAGATTGCTGAC | 20 | 226 | 238 | 228 | -
| - | G40251 |
| Z21657 | 13 | GATAAGCCTGCCCATTTTGA | 20 | CTGAGCACGAGGCTACACAC | 20 | 278 | - | 274 | -
| - | G40265 |
| Z22022 | 13 | TGCATCACTTCCTGTTGAGC | 20 | ACTGCCATTACTGCCACACA | 20 | 246 | - | 244 | -
| - | G41766 |
| Z22194 | 13 | TGTGAGAGATGCATGCAACA | 20 | AGTGCATGCTGTTCAAGACG | 20 | 180 | 182 | 178 | -
| - | G40298 |
| Z22396 | 13 | TTGGACCGAATGAAAAGAGG | 20 | GCCGTGCTGCTTCATATTTT | 20 | 191 | - | 187 | - | - | G40317 |
If you have questions, comments or problems contact us.Back to IndexTable generated Wed Oct 7 16:28:07 1998