Linkage Group 16 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z699 16 CTTGTGAACGTAGCCGTTGA 20 TAAAACCACACACGAGCAGC 20 209 - 207 - - -
Z811 16 CCATGTGGGTGGAAAAGACT 20 CTGTCTTTCAGTTTTGCTTATGTG 24 NA NA NA NA - G41420
Z992 16 TTGACGTAGTTTGTGCGTTTG 21 CAATCAGAGCAGGAGGCG 18 NA NA NA NA - G40862
Z1215 16 TCCTGTGATGTACAGCCTGG 20 GAACCAAGCCCTCGCTTC 18 NA NA NA NA - G41844
Z1276 16 GATCAACCACACTGGCTGTA 20 GTCCTCTCCTGGAGACATCG 20 279 293 275 - - G41848
Z1452 16 CAGATTAGCTTTGGCTTCGG 20 GTTTTAATTCCCCTCCAACTCC 22 NA NA NA NA - G41375
Z1543 16 CATGTTTGAGCACAGCCG 18 TGTTACTGAGGAAATAGTTGACAAGC 26 NA NA NA NA - G41390
Z1642 16 ACAGGCGGTCAGGAACAGTC 20 AAGGATCCGTCAGCACCGGT 20 NA NA NA NA - G41397
Z1786 16 ATCCGCACCGGCCTGGTGAA 20 AGAGTCACCTCCGCATCTGC 20 NA NA NA NA - -
Z1837 16 GAGGCTGGCCTCTGTCGAAA 20 TGATTAATCTTTGCCCAGCACT 22 NA NA NA NA - -
Z3072 16 TTCCCGTCCGAACCAGAATC 20 GGAAACCTATGTAATGTCCCCAC 23 NA NA NA NA - -
Z3104 16 TCCTTTGGAACAAGAGTGACCG 22 CACCAAGCGATATGTTTCCTTT 22 339 - 283 - - -
Z3126 16 ACCAGATTGGCAGAAACACC 20 GTCTGCATCACGCTGCAC 18 238 - 216 224 - G41437
Z3633 16 GCATCCTTTTGTTTGCATGTGC 22 TGAGATTTGCGCTTGTGGGA 20 173 185 175 181 - G41457
Z3741 16 TGCCAATAAAGCACCTCAAACA 22 GACACCTAGCGGCACAGCAG 20 NA NA NA NA - G40344
Z4175 16 GCTGATAGCCCCTTTCAAACAC 22 GTACGGGGCACCTCCATCAG 20 NA NA NA NA - -
Z4543 16 AGGCACGCTCGCTTCTGTTT 20 AAGATCAACAGTAGCCCTGCGC 22 NA NA NA NA - G41520
Z4670 16 AGCGCTGCATACCAATGCAC 20 TGGTGGGTAGAAAATGCAGCA 21 139 - 137 - - G41530
Z4678 16 ACACAATGCTTTGGTATGCTGG 22 GGCGAAACCAGAACACCTGG 20 NA NA NA NA - G40369
Z5022 16 GCCAATGGCTTCAGTTTCCA 20 TGAGCAATTGGTGGCTTACTGC 22 NA NA NA NA - G41549
Z5180 16 GCGCCGCTTGATAAATAAGGG 21 GGTTTACACAGCGGATGCCC 20 208 - 202 206 Use at your own risk G41560
Z6021 16 CTGCCCCACAGGAACATC 18 TTGCCTTGAACATTTTCATCC 21 173 191 169 - - G41816
Z6240 16 GGACCCTTTTAGTATTCCCAGG 22 GAACCACTCATTTAGAGGGTGG 22 273 279 239 245 - G41108
Z6293 16 CAAGGAAAACGCACCGTAAT 20 TTCACATCTTAATGTTGACGGG 22 147 - 123 - - G40417
Z6302 16 ACCACTGTAAACCAACATCTGG 22 TCATTCACAACTCCACGAGTG 21 144 164 156 162 - G40420
Z6322 16 GGCCACTTCCTTCTCTGCTA 20 TCCACAACTGACCTTGTCATG 21 170 - 174 - - G40421
Z6329 16 ACCACTGACCTCTCTCGCAT 20 CCACACCCAGTCAGGGATAG 20 274 - 244 - - G40423
Z6365 16 CAGACAAACATTGGCACAGG 20 CGTGTGCTTACACTGTCTGACT 22 248 - 242 - - G41613
Z6506 16 TTGTGACCGTGGACCGTC 18 CTGTGCGCGTCAGGTCAC 18 179 ? 165 ? - G40444
Z6854 16 TTGACTGTTGGGTTTTACAGTG 22 ACAAGTGACCAAGGAAATGATG 22 ? - ? ? - G41130
Z6921 16 ACCTACTGACCAGGTTATCACC 22 TTATCTTTGCACAATGGACTGC 22 NA NA NA NA - G39619
Z6957 16 AGACAAAAGACGGAGGAGCA 20 AGACGCGTCTGTCACTTGTG 20 ? - ? - - G40485
Z6984 16 TGTAAATGCATAAATTCGAGCA 22 TCAGAGGGATGCTGGACAG 19 ? ? ? - - G40490
Z7231 16 AGCCGTAAAACCACGATGAC 20 TCCTGTGGTCCATCAGTGTG 20 212 228 208 - - G40523
Z7394 16 TGTGTAACTCGTCATTTCTCAAA 23 CTAACTGTTGATGGCATGCA 20 240 254 230 318 - G40555
Z7956 16 CACATGTGCACCGGACTCTA 20 TCTCTCCCCTGGACATCATC 20 128 146 160 - - G40613
Z8250 16 ACACACGCAGAGACATTACCC 21 TTAAAAACGTGACGCGAGC 19 129 n 107 - - G41167
Z8350 16 CGCACGCACTGCTAGGACT 19 TAGATCTACTGTCCATCCAGCA 22 160 - 146 152 - -
Z8731 16 CACTGTTGGTTGGCATCATT 20 AGCCAACAAAGAGCCTGAAA 20 104 136 112 - - G40683
Z8819 16 AGGTTTTGACTGGCAGGAAA 20 CATTTTTAGGTCCCGCAATG 20 131 - 163 177 - G40696
Z8836 16 TCAATGACAATCCTACCTGCC 21 TGGCCTCTACTGAGGTCCG 19 170 - 136 - - G40698
Z9138 16 TCTCTCTCCAACTCTCTGACCC 22 TGTATGTGTACCGTGGACCG 20 ? - ? - G41173
Z9222 16 TTCTGATCAAGCGTTGTGTTG 21 AGGGCTTCTGTCAGTCCAGA 20 121 - 113 - - G41635
Z9269 16 GACTTTCCAAACCACGCAAT 20 GTTCCTGATTGCTCGAGCTC 20 ? - ? - - G40760
Z9491 16 ATGCGTTTCAGGGCTACAAC 20 GACTACGTGAAATAGAGCAACATCA 25 135 143 125 - - G41651
Z9511 16 TATGAGGCATGATGCTGAGG 20 TGCTTTATGTTTCGCGCAC 19 199 259 193 239 - G40802
Z9520 16 CATCACCAATAATACGCGCA 20 GCGTCTGACCTCATTCCTGT 20 137 - 107 109 - G40804
Z9535 16 GCACAGACGGAGTCACTGAA 20 AACCTCGGCTTAACAGAGCA 20 ? - ? - - G40808
Z9559 16 CTGGCACTGTGGTTACCATG 20 AGCTGTGCTTGTGATGAACG 20 NA NA NA NA - G41652
Z9677 16 AGCACTCATTCAATCCTCCG 20 CAGCACTTTCACACAATGGC 20 185 187 189 199 - G40823
Z9685 16 CCTGCTTGTCTTGAGGGACT 20 ACTTCACCCCTGATGGACTG 20 218 - 184 - - G40825
Z9790 16 CTGAACAGATTGTTGGGGGT 20 CTGGATTTCCCTGTGGTCAT 20 223 - 189 195 - G40838
Z9881 16 AGCTGATGTAATCATTCCCACA 22 CCGCTGTCCCTTCTAGAATG 20 ? - ? - - G41662
Z9924 16 TTCAGGACATGCGGTTTGTA 20 CATTACAAGGCCCTGCCTAA 20 ? - ? - - G40865
Z10036 16 GGCCTGAGACACCATACTTTTC 22 GGCTGGGAGACATGAGGA 18 369 - 291 425 - G39742
Z10213 16 AGCTCCACACAGAAATGCCT 20 CACCGTTGCAACTTATCGAA 20 147 - 143 153 - G39763
Z10217 16 ACAGAGCCTTTGTTCGGAGA 20 TCAATCTGTCCTCCGAAACA 20 144 - 166 - - G39765
Z10256 16 CAAAGAAAGCGAAGGCATGT 20 TGACTGTCGAAGGAAACGTG 20 128 - 134 140 - G39769
Z10327 16 AAGTGAAAATGCACACATGCA 21 CAGCTGCTGCAGAAGATCTG 20 261 - 257 - - G39780
Z10632 16 GCCCTTACAAAGCCTCAGCT 20 GCCTCCTGCTTCTGATGAAC 20 188 198 190 212 - G39815
Z10671 16 AAGCATGATTTATGCAGCATTTT 23 ACAAGCCCCTCCCATTTTAC 20 133 - 107 - - G41703
Z11246 16 TGCAGGACGATGTCTCTGAC 20 CGTCTGGAGACCCTCTGAAG 20 255 283 261 337 - G41715
Z11376 16 TTTGAACTTTCATCCCCCTG 20 CGCAGTCTGGGATGGAATAT 20 241 - 231 - - G39899
Z11385 16 CCTCACTGCTGACAGAACCA 20 GCTTGTCTGCCCTGCTAAAC 20 147 - 151 - - G39904
Z11452 16 CACACTCTGTGTGCCCATTC 20 CCACTCAAGCGCACATCTAA 20 254 - 308 - - G39912
Z13202 16 TAAACAATGCATTGGGCTGA 20 TCTGGGTAGACTAGTGCGACC 21 193 - 171 - - G41598
Z13305 16 ATTCCCAAAATTTGGTTCCC 20 AACTATTGGCTGCAGCAGGT 20 185 213 193 205 - G40005
Z13490 16 CGATGACCAACAAACACCTG 20 CCATGTGTCAAACTCTTTCTGTATC 25 129 - 127 - - G41764
Z13511 16 TCCAGATGTGTTTATCTGGGC 21 CCGTGTGATGGATTAAAGCA 20 171 175 169 179 - G40031
Z13555 16 CAGTGGTGTACGCAGCATTAA 21 CTAGGCATGCCAGCTTAAGG 20 116 - 108 112 - G40036
Z13925 16 TGGGAAAGCGCTCTCAGTAT 20 CAGATGTTCAGTGCTCTGCTG 21 ? - ? ? - G40088
Z13946 16 CCAACCTCATCACTTCAGCA 20 GCTTTCTAATTGCCTGTGGC 20 ? ? ? ? - G40093
Z14058 16 CATGGACAGCAATTTGGTTG 20 GAGCGATGGGGAAGTATCAA 20 ? ? ? - - G40101
Z15453 16 CACGATCACCAGCGATCTAA 20 GCGTCTAGCAATATCGCTCC 20 ? - ? - - G41100
Z17246 16 ATATCAGCAGGAGGGACGG 19 TGTCTGTCTTTCTGTGATGCTT 22 138 150 142 - - G41817
Z20177 16 TCAATCTGTCAAACTCCGCA 20 CGCTTTATAGGGCTGCAGAG 20 242 - 228 - - G40162
Z20404 16 CGACAGTATGTGCAAATTAAAACA 24 TGTGAGCCACTTTTTCATGC 20 193 - 195 - - G40170
Z20704 16 TGCTTTATAGGCCTCAGCGT 20 CTCCAGCAGCTCCAGGTAAC 20 123 - 107 117 - G40195
Z21116 16 CAGTGTGATGCTCGTTCTGG 20 CTGACCCTCATCCCACAATC 20 168 - 158 178 - G40225
Z21155 16 GAAGCTTGTTTGGGTTTGGA 20 CCACAAAGGCGAAGACATTA 20 137 - 157 - - G40229
Linkage group 15LegendLinkage group 17

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Table generated Wed Oct 7 16:28:07 1998