Linkage Group 18 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z3763A 18 CCAATTAACGGAAGTGAACCGC 22 GCACTGGATCAGTCCCGCTT 20 266 - 260 - - -
Z737 18 AACACTTGATATTGCATGACGG 22 ATGTTGGTTAGCATGCACCA 20 108 - 98 - - G40551
Z928 18 CCAGAGTACTCGATCTGTCTTGA 23 ACACCTTCGGCAGTTTTCAC 20 94 - 106 - - G41428
Z1136 18 TCATGTGAAGCCTGCAGTTC 20 AGCTTCAGCTGTTTAAAGGTGC 22 105 119 111 115 - G41324
Z1144 18 CTCCTCTCCGGGATACACAC 20 ACCACGAGTCTGAGTGCTGA 20 253 - 263 - - G41328
Z1201 18 GGAGCTGTGGAGCACAGAAA 20 CGTGTACTACCCCGGCAC 18 NA NA NA NA - G41340
Z1261 18 AGCAGGGTGGAGAGTCTGAA 20 CGGTCTCAGAGGAGATCTGC 20 NA NA NA NA - G41348
Z1417 18 GCGGAGACACAGCTCTGAACG 21 TCCAGGATGCAGGCGTTGTA 20 NA NA NA NA - G41369
Z1654 18 CGTCCAGCACTGCCGACATC 20 CAGCCGACTGAAGGTGTAGAGC 22 NA NA NA NA - G40131
Z1795 18 TGGGGTCCAGCCTTTGCTGA 20 GCTGCACGCCACCGCCTACT 20 NA NA NA NA - -
Z3232 18 TCACCCTTTGGCCATGTTGT 20 AGGGGCCCTTAAGTGGACTCC 21 221 239 193 - Use at your own risk -
Z3558 18 GTTATTGGCACCAGCCAGGC 20 TGATAGTCCTGTCGCCGCAA 20 161 243 157 - - G41451
Z3838 18 CGTAAATGCAGAAAATTGGGCT 22 ATGCTTGAGCCCATGAATGG 20 NA NA NA NA - G41468
Z3853 18 TCCCTCACAGCTACTCAGCAAG 22 GAGGCCAAGAAAGAAATCTCGA 22 NA NA NA NA - G41469
Z3892 18 CGCGCCAAATCATCTTTCCT 20 TTCACACACGCTCACGTCCA 20 NA NA NA NA - -
Z4263 18 AAGCTTCACGCCAAAGACTGTG 22 ACAAGCACACCATTGCTGCA 20 324 - 318 320 - G41492
Z4378 18 AACTGTATGATCGCCTTAAC 20 ACTTCCTGTCTAGTGTCTGATTAT 24 NA NA NA NA - G40361
Z4717 18 AAGGTGAAGTGTGTGGCCTTCA 22 CGTGAGGTTTGCTGTCACGG 20 NA NA NA NA - G40372
Z5231 18 AAAGTTGGGTTCATGTTGTGCG 22 ACGGATCACATCAAACCTGTGC 22 144 146 148 150 - G40384
Z5321 18 TCCTCCACTGAGGTCACTTCCA 22 TCATAAATTAAACCCCGCCCTC 22 NA NA NA NA - G41572
Z5442 18 AACTGACTGTAGCGCATGGGG 21 CAGAGGTCGCCACAGTGGAA 20 NA NA NA NA - G41580
Z5479 18 AGCCGTATGACAGCTTTCCAGG 22 CTGTCCACAATGAAGCAGCACC 22 NA NA NA NA - G40391
Z6098 18 ACCTGATGGCTTTGTAACCG 20 CAGCACCTCATCAGGCCT 18 118 - 104 - - G40403
Z6572 18 AGGGCTCAGTGCTGTTCG 18 CTTGCCGACGCTCTTGAT 18 267 - 303 325 - G41618
Z6709 18 GCTCAGCCGAGGTTAATCTG 20 CCGGATCAAACTTGAGGAAA 20 122 124 116 118 - G41641
Z6710 18 CATGTAGGGAAAGGAAGCCA 20 CCTCTGCTCAGACTGCAGTG 20 122 ? 100 114 - G40462
Z7142 18 TGGGAGGAGAGGCACAAATA 20 TAGATGCGTGCAAGAGTTGC 20 281 233 345 n - G41771
Z7256 18 CTTCCGAGAGTCCACAAAGG 20 TGCTCTGAAATGGAAATTTTCA 22 367 - 411 - - G41143
Z7330 18 GAAACCCGTGAAGGTTTGAA 20 CTTGAACAGAGCAGAGTTCAGA 22 153 159 157 181 - G40542
Z7417 18 TCCGTGATTTCCTCCTGATC 20 TCAGATTTAGAGCACGCGC 19 259 - 199 - - -
Z7426 18 CAATCAGCCTTACACGCTCA 20 TGCTGGAAGTGTGTGATCTTC 21 136 178 142 152 - -
Z7618 18 AAGCATTTGTGGTTTAAATGCA 22 GCTGCCCATTCTTCAAACAT 20 141 - 127 129 - G40577
Z7654 18 CCAATCACAGAGGCAAACAA 20 TCATGCTGAAAGGTGTTGGA 20 151 - 257 315 - G40585
Z7865 18 TGTCTGTTAGGACTCTGGAGGA 22 CTCACACCATGCTGCACAAT 20 233 271 229 n - G40602
Z7961 18 TGCTCTTCTGTATTCTGCCG 20 CGGGGTATCTGCAGACTGAT 20 177 - 171 181 - G40615
Z8343 18 TGCAAATCAGATTCTAGAACCA 22 ATCATTAGGACACGCAAGGG 20 194 216 200 - - -
Z8468 18 TCGTTATGAACCCCTAAAGCA 21 CACACAGGAGACCGGGTTAT 20 225 - 209 211 - G40655
Z8475 18 CATCTGTTAGTGTGTGCGTGC 21 TTGATTTGGCTAGAGATCCTCTG 23 - G40658
Z8488 18 TCACTCATGCGTTTACCCAA 20 CCCCCACGGTGTATTGATTA 20 130 - 118 120 - G40659
Z8525 18 AAAGCAGAGCAAACCTGAGTG 21 CTGAAAATGGGAAACGAGGA 20 196 - 204 208 - G40664
Z8788 18 GTTCTTGTCCCGGCTGAAC 19 TGCAACCCATCACTTGAAAA 20 206 210 216 220 - G40690
Z8823 18 CTGCAGGGAGAGGCATTG 18 TCTAATCAGCGCCCTTCTTG 20 275 - 265 - - G40697
Z8840 18 TGGATCCTCATCACAGGACA 20 GTGTGCATGCTTGGAAAAGA 20 259 299 277 n - G40699
Z9024 18 CCACTGCAGGGTACTGGTG 19 AAAAGCCACACACTTTTGGG 20 221 - 237 239 - G41819
Z9094 18 CAACCCTTGACCCTCGTG 18 TGACCAGAGTTTCTTGGCG 19 267 - 261 - - G40726
Z9154 18 CACGGGCTCTCTAATTGGAA 20 CCATTAGCAAGTCGTGACGA 20 157 179 161 163 - G40738
Z9194 18 GAGTGCTGTCCACCCACC 18 AAATAAGCCGTGTGTCTGCC 20 117 - 113 - - G41631
Z9231 18 GAAATTACAGCTCCATAACGGC 22 TCTGCTTCATTCCCTGCTG 19 228 - 226 252 - G40750
Z9404 18 CCACTGATGGACAGGGTAAC 20 GTGATCTTTGGCGTCTTCG 19 267 - 179 - - G40787
Z9484 18 GCCTCGGGTGAAAGACATAA 20 TACTTGTGGAGACATTTGGCC 21 123 125 157 161 - G40799
Z9801 18 ATCAGTGTGTCCCGCTTCAT 20 CGCCGGAAACTCTTATCATC 20 ? - ? ? - G41659
Z9941 18 GCACACTCGCACATTAACCA 20 TTGCACAGAGCACATTCCTC 20 ? - ? - - G40867
Z10008 18 AAGCCAAACTGATGGGTACG 20 GGCTCCTTTGATGTCCCATA 20 149 259 183 - - G39738
Z10264 18 GTTCAGACACCGACCGTTCT 20 ATGTTGCCATTTTCACACCA 20 176 - 174 - - G41691
Z10312 18 CGCGTGTGACTGATGGAGT 19 ATGTGTAGGGCGTTACCGAC 20 102 - 98 170 - G39778
Z10691 18 GTGAGGGGTTCAAACCTCAA 20 TCAATGGCTCAGACCCCTAC 20 118 120 130 - - G41705
Z10729 18 AGCGTGTAGGAAGCTTTCGA 20 TGTGCTGACACTGCAACAAA 20 273 295 305 319 - G39822
Z11257 18 AGAACAGGCTTGGCCAACTA 20 CTTTGTGTACACGTGGCCTG 20 108 - 102 - - G39883
Z11270 18 GGTCTGCAATCAGAGAGAAAAA 22 TTAGCCAGATGCTGAGCTGA 20 166 - 196 204 - G39885
Z11608 18 ATCAGAAGAGTATTGTCAACGCA 23 CACAAACTGAACTGCAGACTCC 22 NA NA NA NA - -
Z11685 18 TACGTCAACAGCTTCATCGC 20 ATGCACTCCTGTCCCTCTGT 20 198 282 236 - - G39945
Z11709 18 GCCTCCCTCATGCATACACT 20 CTTTCTTCCATCTCCCCCTC 20 123 - 115 121 - G39951
Z11854 18 GCTGAAAGGCTGGAACATTC 20 TTCAGTTCCCCGTGAAGTTC 20 ? - ? - - G41753
Z11944 18 GGGGGCAGTAAAGTCCTTGT 20 TGTCTCTTTCAGCGCTCAGA 20 261 - 235 259 - G39975
Z13220 18 CGGCTTTAAAGATTCACTGACA 22 TTGAGCAATAATGTGAAGCTGC 22 128 - 124 126 - -
Z13231 18 CCTGGAGCCAGGTACAGCTA 20 CTCTGCTGAGCGAGAGGTTT 20 251 299 255 275 - G41820
Z13260 18 TCCTGACAGACTGCTTTTTGC 21 AACTTCTCCCCAGTTCACATG 21 NA NA NA NA - G39079
Z13329 18 CCATATGACCTGGCTGGAAT 20 CCAATGACATGATCACATCGA 21 242 - 218 238 - G40009
Z13380 18 AAACCGGAGACAGCAGGTTA 20 CTGTGTTCTGCTCTGCTGCT 20 209 - 203 205 - G40015
Z13426 18 CCGTTCCTGGAGTCCTGATA 20 GGATCCCAGACTTCAGGTGA 20 122 - 112 - - G41763
Z13692 18 CCTAAATTGCGCATGCAC 18 TGTGGATTCAGACAGCCTTG 20 233 241 227 - - G40061
Z13768 18 CGAGCTGAAACATTCGACTG 20 ACCTGTAGCCCCAGTTGATG 20 269 - 331 399 - G40070
Z13836 18 CCTGGAGCCAGGTACAGCTA 20 CTCTGCTGAGCGAGAGGTTT 20 ? ? ? ? - G40079
Z14011 18 CACAGCTCACTCCAGCAGAA 20 GACGGCTCTCTAGCGCTCTA 20 ? - ? ? - G40097
Z14048 18 AAAACCAATTAGCAGCGAGG 20 GTTTGGGTCCCCAGTCTTTT 20 NA NA NA NA - G39179
Z14136 18 ATGATGCAGATCCCCTGTTC 20 TCCTCTGAGAACTTCCTGCTG 21 103 107 93 129 - G40111
Z14176 18 GCAAACGCATAAACAACCCT 20 TTTGATGGTAAATGGCGTGA 20 ? - ? ? - G40113
Z15417 18 CTGCAGTCTAGCCAGCAGC 19 GACGGCAGCTCATTCTTCTC 20 120 - 118 - - G41095
Z20015 18 ACACCACCTGTGCTTCATGA 20 ACCTGTTTGTTTCCTGGCAC 20 173 - 169 - - G41724
Z20602 18 ACAGACCAGAGAGCTGTTTTCC 22 TGTTTATGGAGATGTGGCCA 20 141 143 137 - - G40186
Z20605 18 TCCCCTATGAGCATGAATCA 20 ACTAAATTCAGTGACAACCCGG 22 136 - 154 - - G40187
Z20981 18 GGACGCTGGATTGACAGTTT 20 GATCATGATGATTGACACTTTCG 23 183 197 183 - - G40214
Z21330 18 TCCATCCAAAATCATATCTGTAACA 25 GGCATTAAGCTTGACGTGGT 20 309 - 273 - - G40242
Z21505 18 ACACCGCAACTCTTACCTGG 20 CCGTGCAGGAACTCATACCT 20 169 177 173 177 - G39363
Z22032 18 GCATGTCTCTGCGTATGCAT 20 CCTCATGCTCTCCCACTAGC 20 137 141 141 143 - G40283
Linkage group 17LegendLinkage group 19

If you have questions, comments or problems contact us.

Back to Index
Table generated Wed Oct 7 16:28:07 1998