Linkage Group 20 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z374 20 TTTTAATCCAGCAGCAGATCTG 22 CCCAGGTTCACAAACCCTC 19 166 194 206 - - -
Z536 20 ATCCAGAGTGTGTCCCAGTTG 21 AGGTGTGTCCCACTGACTCC 20 118 - 124 - - G41408
Z3211 20 AATGTGCAAGAAATCCACAGC 21 GAGGTGAGAGCCAAGAGCC 19 NA NA NA NA - G40332
Z3824 20 CCGCTTAGATGTGCATTATCCC 22 TGGCATTCCCGTTTAAAACCC 21 NA NA NA NA - G41467
Z3954 20 AATGGTGTAGAAACCCTGCG 20 AAACGCACTAAACATCTCTCTTG 23 277 - 163 181 - -
Z3964 20 GCCATTTTTCTTGCTGCAATCA 22 TGCATGCCATAACAAACACTGG 22 275 - 209 351 - G40351
Z4157 20 GGATGCGCAAGGAGAATGCT 20 TTCAAGCGCGAGAGAAAAACG 21 NA NA NA NA Use at your own risk G41480
Z4304 20 TTAAACTCCTTTGCTCGAGCCG 22 CAGACATTGCCTGAGGATGCC 21 NA NA NA NA - G41502
Z4329 20 CAGGTGGAACATTTCCTTTGCC 22 GCCTCCAGACAGAATGCAGC 20 166 204 220 418 - G40358
Z4394 20 CAGCGGTCTGAAATTAATCGGC 22 GGTAACAGGACAGTGCCACCG 21 237 - 259 - - G41514
Z4627 20 GGGTGATGTGGCCAAGGTCT 20 AAAGGGGGACCACAGTTTGAA 21 290 - 268 286 - -
Z6357 20 AAGTGGCCGGTGAGTACAAC 20 TACTGCAGTTTGCACTTTCACC 22 173 203 171 181 - G40426
Z6425 20 ATCATTCTGGACATGGACTGC 21 TCAATATCTTAATCGCCTGCTG 22 280 - 262 296 - G40436
Z6804 20 ATGTGGGAATACCTGGACCA 20 TCTGATGGCTCTCGGTTTCT 20 182 - 166 - - G40469
Z6973 20 TGCTGCATGACAGCCATT 18 TCCTGTTCATCATCTGAACACC 22 ? - ? ? - G40487
Z7158 20 TGACATTCCTAGTCCATGTTCA 22 CCCATTTGTTGCATAATTTGG 21 183 - 237 271 - G40512
Z7171 20 TTCTGGACATATGGAGCCTCTT 22 ATGACCTGTACCGACCCAAA 20 270 278 234 240 - G40514
Z7568 20 CGTGCTTGTTGCTGCATAGT 20 ATGTCTTGGTCACACTGTTTGG 22 289 299 307 321 - G40573
Z7603 20 CCCAGAGTCGAGACTTGCTC 20 GGAGTCGGGAAAGTGTGTGT 20 168 176 158 184 - G41665
Z7803 20 GCCAAACTGAGCCTAGAAACC 21 TGCTTATTTGTAGGCCACTGG 21 231 - 211 257 - G41158
Z7933 20 TTCTCTAAACCGCTGCAGGT 20 TCTCCTGAGAACCGAATCGT 20 259 265 225 269 - G41671
Z8150 20 TTTAGCTTCCTGTCACGCCT 20 GATTGCCATAATTGTTCCGG 20 NA NA NA NA - G39715
Z8164 20 GAGCAAATGCATACACTGGG 20 AAAGATGAACCACCTGCTGC 20 108 - 102 - - G40628
Z8219 20 ACACGCACTGAACACAGAGTG 21 CCCACTCACCTCCACACAC 19 129 147 111 137 - G41163
Z8554 20 CGGTAAATCAGTCCCAGCAT 20 ACCTCTGCAGGACTGAGGAA 20 112 - 92 226 - -
Z8706 20 GCAGCAAATCACAATCAATCTG 22 TAATCGCTGCTGTCTGTTGG 20 263 289 211 247 - G40679
Z8809 20 CTTGATTGGATGGCCTGAGT 20 TCTCAGTCATGGTTGCTTCG 20 292 - 318 340 - G41687
Z8976 20 GTGAGCAGCCAAACAGATCA 20 CTCTTCACATGCCCCTCACT 20 221 - 231 249 - G40712
Z9209 20 CAATACCTTCCGGATGCACT 20 CAGACCGGGATAAAAGGTGA 20 126 142 122 - - G41633
Z9334 20 CACATGGTGCTGTCGCTC 18 AGTCTAGAGCGCCATCTACTGG 22 129 141 143 161 - G41180
Z9343 20 CTGCGGCTGATAAGAACACA 20 TGATTTCCTCAGTTGCAGCA 20 176 - 168 174 - G40770
Z9708 20 GAGCGGCAAGTATGTGGATT 20 AGGAGGCGAATCAGACTGAA 20 210 - 164 172 - G40829
Z9729 20 CGCTTTCTGTCTGGTGAACA 20 GTTCTCAGGGGCTGGTTACA 20 246 248 240 242 - G41189
Z9794 20 TCACCTTCTGAGGAGCAGGT 20 GTGGCTGCTGGAGCTTATTC 20 199 - 153 - - G40841
Z9959 20 GACGCTTAATTGCAGCTCCT 20 AATTGCACAAGCGAAGTTTT 20 ? ? ? ? - G40869
Z9962 20 GCTGAACACCACCATCACAC 20 TCAGCTGTGAGGGAAGCTTT 20 159 - 139 161 - G40870
Z10056 20 TTGCAATGTGTATGCTGTCAAA 22 CAAGTGTCCACTCACCCAAA 20 184 200 172 260 - G39744
Z10177 20 GCAGAGCTGGAGTCTTCATCA 21 TCACCATTCAGCAACAGCTC 20 142 - 152 158 - G39759
Z10452 20 TCATCATGGGAATCTGCTGA 20 TCATTTGGACATCCAAGGGT 20 132 - 136 - - G39795
Z10756 20 AAAAGTTCCGTCAGTCACCG 20 ATACGCTGAGTACGCGACCT 20 189 - 191 199 - G39826
Z10901 20 CAGTGCAGATTCTCCATGTCA 21 ATTGAGAGGCGCTGCATTAT 20 224 - 236 - G39840
Z11047 20 TGCAGTGAACTCAGCAGGAC 20 GGCAGCTTCATATCCAGACG 20 240 - 212 218 - G39861
Z11841 20 TTCTGTCACCTGCAGTTTGC 20 GGCACGTAAAAGCGGTTTAA 20 243 - 245 - - G39962
Z13214 20 ATGCCCTTACAGTTGCAACC 20 CATGTTTTCCCCATGCTTG 19 236 - 210 230 - G41824
Z13453 20 TGAGCTTCTGTTCTGCCTCA 20 ACGGGAAGTAAGAGCGATCA 20 132 - 128 130 - G40025
Z13626 20 TGCTAACACGTGTAGTTGCAGTT 23 GTTTCCTCACCTTGCTCTGC 20 233 - 229 231 - G40047
Z13672 20 TGCAATGTGTTTTGACTGCT 20 CAGCATATTGGCTGAGCTGT 20 97 - 79 - - G40056
Z13678 20 TCACAATTAATTGCATCCAAAA 22 TTGGCAGAGAGTAGGATGGG 20 - - - - - G40058
Z13867 20 TGAGTGTCAACGGCAAGATC 20 TGGCAACACTAGTGGGTTGT 20 127 129 123 - - G40081
Z17204 20 GGGGTGAACTGTGCCTTTAA 20 ACCGAGGAGAACTCGAGACA 20 208 - 240 250 - G39208
Z20046 20 TTCAGGTTTAAGGTTATAAAAACGA 25 AACCAATATGTCATGGCATCC 21 241 - 145 - - G40149
Z20538 20 TGTGTTAAAAACAAGCATAGGATCA 25 TGCTGTGGACAAGGAATGAA 20 147 157 135 145 - G40181
Z20582 20 GCTGTAGCGTTAACAGCGTG 20 CTGACGGAGGTTGTTGGTTT 20 259 - 231 - - G40185
Z20719 20 GTGTCGCTTTGGAAGAGAGG 20 GGGAGTGTCTGAACCATGCT 20 279 - 194 325 - G40198
Z21067 20 AGCCTCACTGGAACAAAAGC 20 ATAAAGAAGACGCCGCTTGA 20 252 - 192 228 - G40220
Z21123 20 ATCCAGACGGAGTACTTGCG 20 AAGACGCACGGTAAACATCC 20 284 - 274 290 - G41739
Z21170 20 AAACATTGCTTTTGGCCACT 20 CTCACTCCCCCACACTGTTT 20 211 - 201 - - G40231
Z21401 20 CTGTCATAAAAACAGCGGCA 20 GCTGATTCTTTTGTTGGGGA 20 203 - 201 205 - G40247
Z21485 20 GAGGAAAGTAGAGGCGCAAA 20 CCCTCAGATATTCATGCCGA 20 149 157 143 153 - G40257
Z22041 20 CAAACACCGAAATACATGCA 20 GCGGAAGACGGTTATTGAAA 20 160 - 150 - - G40286
Z22144 20 TGTGGCTCTGCAGAATCAAG 20 TCCATTCCTGTGAAGAAGTGT 21 NA NA NA NA - G39446
Z22659 20 GCCCAGTGGACCAGAGTAAC 20 GAACAGGCCTCTTCTGGTTG 20 NA NA NA NA - G39505
Z22926 20 TCAGCGTTTTACCTCACACG 20 GCCTTTCTTTCAATCCACTCTT 22 NA NA NA NA - G39526
Linkage group 19LegendLinkage group 21

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Table generated Wed Oct 7 16:28:07 1998