Linkage Group 21 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.| Marker Number | Linkage Group | Forward (+) Primer Sequence | Length | Reverse (-) Primer Sequence | Length | AB_1 Size | AB_2 Size | In_1 Size | In_2 Size | Comments | dbSTS Accession |
|---|
| msxD | 7 | AGCTCCGTCTTCACTGACTGACA | 23 | TGTGGTGGACATTAACTCATCCA | 23 | NA | NA | NA | NA
| - | - |
| Z382A | 21 | GTGTCCGTTTTTTCGGTGTT | 20 | TAGCACGCTAACGGCTAACA | 20 | 94 | - | 104 | 128
| - | - |
| Z382B | 21 | GTGTCCGTTTTTTCGGTGTT | 20 | TAGCACGCTAACGGCTAACA | 20 | NA | NA | NA | NA
| - | - |
| Z16 | 21 | ATACTCAAACACATCCCAGCC | 21 | GAGGTGCACGTCAGCGAC | 18 | NA | NA | NA | NA
| - | - |
| Z18 | 21 | CTCTTTTGCCTCCTCTCGG | 19 | CAGCCTTAACACTGTGTCTGTG | 22 | NA | NA | NA | NA
| - | - |
| Z540 | 21 | GTGGCCGTCAGTTCAGCT | 18 | CCTCCTGTCAGGTGAAGCTC | 20 | NA | NA | NA | NA
| - | G40388 |
| Z722 | 21 | AACTGAATGACTATGGGCGC | 20 | TCTTCTTGGTAACCAGACAAAGC | 23 | 125 | - | 107 | -
| - | G40518 |
| Z953 | 21 | AGAAAAGAGTGAGGACTGTGTGC | 23 | TGCGAGTTGACAGCCTGTAC | 20 | 98 | - | 100 | -
| - | G40807 |
| Z1162 | 21 | TTTATTAATATTCTGTGCTGGGC | 23 | GCCGGAAAGACACCTTCATA | 20 | 134 | - | 134 | 140
| - | G39936 |
| Z1251 | 21 | ACGCTGAAGGCCCAGACAGT | 20 | TGTTCTAGCATGATTTACTAGC | 22 | NA | NA | NA | NA
| - | G39990 |
| Z1274 | 21 | AGCTGCACATCACTGAGGG | 19 | GCAGGACGAGCTCTGAAAAC | 20 | NA | NA | NA | NA
| - | G41352 |
| Z1295 | 21 | CGCTCGGGATTGAAGGTCATT | 21 | CTGGAGATATTCACTGAACAAC | 22 | NA | NA | NA | NA
| - | G39995 |
| Z1456 | 21 | AGATGGCTGGCGGACAGAAC | 20 | GAACGACAGCTCTGAGGATACC | 22 | NA | NA | NA | NA
| - | G41377 |
| Z1497 | 21 | AGCGGCTCGCATCACTATAC | 20 | TGTAGAGCCACTCGACACATG | 21 | NA | NA | NA | NA
| - | G40119 |
| Z1806 | 21 | TCACTGAGCCGTAAACCCTCG | 21 | CTGTACCGTCGCTCTGCGCT | 20 | NA | NA | NA | NA
| - | G41433 |
| Z3332 | 21 | CAGCACTGCACGTGAACCAC | 20 | CTGGGAGACTCCATCAGTGCA | 21 | 136 | - | 144 | -
| - | - |
| Z3476 | 21 | GGAGAGCTGCACCGTGAACA | 20 | GCCGGAAACCGCAAGTGTAG | 20 | NA | NA | NA | NA | - | - |
| Z3561 | 21 | ACTTTGAGGGATACAGACCGCG | 22 | AGGGAGTCACTGTCCCTGCG | 20 | 138 | 144 | 128 | - | - | G41452 |
| Z4020 | 21 | AAAACACGCACCCACAGCAG | 20 | CCGTGCGGTTCTGCTTATGA | 20 | NA | NA | NA | NA | - | - |
| Z4074 | 21 | CAGAGTTTATGGGGATCAGCGG | 22 | GGCCGACACAGTTACAGGCC | 20 | 254 | - | 176 | 202 | - | - |
| Z4082 | 21 | AACCACCGACTTCCATAGCAGG | 22 | AAAGGCTTGCAGCGCCATCT | 20 | NA | NA | NA | NA | - | G41478 |
| Z4192 | 21 | CATCCTCAGCACCCTCAGACTG | 22 | ACTGGATGGAGACCAAGCGC | 20 | NA | NA | NA | NA | - | G41485 |
| Z4425 | 21 | ACACGACAGGAGGGGGAGGA | 20 | CCCAAATGGCTGTGCTACAGG | 21 | 126 | 154 | 176 | - | - | G41517 |
| Z4492 | 21 | ACCTGAGTGGTGGCAGAAGACC | 22 | TGGTGCAATGTTGACTGAATGA | 22 | 152 | - | 124 | - | - | - |
| Z4718 | 21 | CATTAATCCAGCAGCGGATGC | 21 | ATCCATGCGCAAACGTCTGA | 20 | 246 | - | 254 | - | - | G40373 |
| Z4773 | 21 | CATTAAACATGATGACGGCG | 20 | ACCAAACGGAGTGGATGAAG | 20 | NA | NA | NA | NA | - | G40376 |
| Z4827 | 21 | CCCGCTAACAATGGAGAAAA | 20 | ACACGCACAGGTGTCATGTT | 20 | NA | NA | NA | NA | - | G41539 |
| Z4910 | 21 | TTGAGGGCATCCGCTGTGTA | 20 | TGAGTGCTTCAGCACCCTGG | 20 | 398 | - | 414 | - | Use at your own risk
| G41545 |
| Z5503 | 21 | GTGAGTCGGATTCAGTAGGCCA | 22 | GCAAACTCCACACAGAAATGCC | 22 | 235 | 315 | 247 | - | Use at your own risk
| G41583 |
| Z6083 | 21 | CGACCCCTGACGAATAAAGA | 20 | CGCTGACCTTCACAAACAGA | 20 | 196 | - | 230 | - | - | G40401 |
| Z6087 | 21 | GAACAAAGATGTGCCCGG | 18 | CAGCAGGAACACACGCAG | 18 | 102 | - | 96 | - | - | G41610 |
| Z6089 | 21 | TGCAATCCTTTATTGGGAAA | 20 | GTGTACCTAATAAAGTGGCCGG | 22 | 123 | - | 143 | - | - | G41103 |
| Z6174 | 21 | TGAGATTGTCCTGCAGTCAC | 20 | GCGGACTGCATGTGAGAGT | 19 | 165 | - | 177 | -
| - | G41853 |
| Z6218 | 21 | CCACTGCAGATCCTCCTTTC | 20 | GTAACCTCTCTGGCCATCCA | 20 | 129 | - | 133 | 135
| - | G40407 |
| Z6243 | 21 | ACAACGACACGAGCGAATC | 19 | TCACACCAAACTGTGGAATCA | 21 | 115 | - | 136 | -
| - | G41854 |
| Z6271 | 21 | GTCAGATTTCACTCCGACAGA | 21 | ATCACCTTCACTTGTTCAGTCG | 22 | 272 | - | 260 | -
| - | G41109 |
| Z6281 | 21 | TGGCATGTTGTCGTGTCC | 18 | TAGCACGCTAACGGCTAACA | 20 | 116 | - | 122 | 142
| - | G41110 |
| Z6295 | 21 | TCACAGCAGGTTAGTCACGTG | 21 | GTGAGATCTCTATCGTCATGCA | 22 | 172 | - | 160 | -
| - | G40418 |
| Z6537 | 21 | AGAGTCAGACGAGACTGCAGG | 21 | AGTGCTGTCGCCTCACAGAG | 20 | 96 | - | 126 | 142
| - | G40446 |
| Z6571 | 21 | TGCAAACACACTAACAGCACT | 21 | GAGTACAACCAGGTCAAAACCC | 22 | 159 | - | 143 | ?
| - | G40451 |
| Z6869 | 21 | TTCAGTGCACCTCACCAGAC | 20 | TGTATTTGACCCTCTCACATCG | 22 | ? | ? | ? | -
| - | G40479 |
| Z7117 | 21 | CCACAAACACAGCCAGAAAA | 20 | GTCGTGCCGACCATAAAAAC | 20 | 222 | - | 208 | 240
| - | G40503 |
| Z7224 | 21 | GCTGTGTTGATGTGGGAATG | 20 | TCTCGGCTTGGAACTTCATT | 20 | 278 | - | 280 | -
| - | G40520 |
| Z7405 | 21 | TCATAAGAGCAGTGCACTGACA | 22 | GGGAGCGCATCACAGACT | 18 | 259 | - | 231 | -
| - | - |
| Z7423 | 21 | TCTCCAAGGTTACATGTCGC | 20 | TGCTTGTCTCCAGGGCTC | 18 | 294 | - | 286 | -
| - | - |
| Z7609 | 21 | GAACAGCGATGTGCTCAGTT | 20 | TGTGGATGTGCCTCCTGTTA | 20 | 216 | 314 | 214 | -
| - | G40576 |
| Z7809 | 21 | GCCCTCCATTTGCAGTTCTA | 20 | ACAGATGGTGAGAGCGTGTG | 20 | 250 | - | 208 | -
| - | G40593 |
| Z7925 | 21 | CAGTCCGTCCCTTCTTTCTG | 20 | TTCATCTGTCTTGTGGCAGC | 20 | 204 | - | 236 | -
| - | G41669 |
| Z8073 | 21 | TTCTAAAGGGTTGGTGTCGC | 20 | CTCTCTGAGGCTGGAGAAGG | 20 | 269 | - | 221 | 229
| - | G41674 |
| Z8230 | 21 | ATCACTGACGGGGTCCCT | 18 | TCTCTCCTCTCCCCTAAATTCA | 22 | 250 | - | 254 | -
| - | G41684 |
| Z8316 | 21 | AGACCATAGCAGAGAGCCCA | 20 | TTCTTTGGAACCCACAGTCA | 20 | 122 | 142 | 174 | -
| - | G41168 |
| Z8803 | 21 | CCGATGACACGTCCTTACCT | 20 | ACACTGTTATTGCCTCTGGG | 20 | 207 | - | 193 | -
| - | G40693 |
| Z8895 | 21 | ATGAGGTTACGGCTGAATGC | 20 | AACAGCCAGACGGTAACCTG | 20 | 159 | - | 111 | 123
| - | G40705 |
| Z9055 | 21 | ACCACTGGCGCTCATCTC | 18 | CGCCTTCATCATCATCACC | 19 | 132 | - | 118 | 162
| - | G40720 |
| Z9233 | 21 | ATCAGGAAACAATTCACCGC | 20 | AGAAAAGGGGGCGAAGGT | 18 | 185 | 211 | 117 | -
| - | G40751 |
| Z9236 | 21 | CAGAGCAGGTGCAGAACACT | 20 | ACAAAACTGAACACCAGCACC | 21 | 256 | - | 238 | 254
| - | G40753 |
| Z9339 | 21 | TCTGCTTTGATGTCGACCTG | 20 | CCAAAGTAAAGGTGTGACAATG | 22 | 287 | - | 273 | 299
| - | G41645 |
| Z9728 | 21 | GTGAAGCGCTCTGAGATTCC | 20 | CCGGAGAGTTTGACTGAAGC | 20 | 198 | - | 190 | 202
| - | G40831 |
| Z9792 | 21 | TGGTGCCATGTTGATCTGAT | 20 | ACGCGTTATTGAACGTCTCC | 20 | 270 | - | 258 | 260
| - | G40840 |
| Z9956 | 21 | GCTTGGGTTTGGATTCTTCC | 20 | AGACTTCATTGTCTGCTTTGTG | 22 | 158 | - | 146 | ?
| - | G41657 |
| Z10305 | 21 | CGCAAAATATTTATGGCACAGA | 22 | TTGAATGTAAAAATGCAAACCG | 22 | 178 | 200 | 156 | -
| - | G39777 |
| Z10432 | 21 | CAAAATAAGGGGCCTTGACA | 20 | GATGACTGCTCTCCCTCGAC | 20 | 244 | 258 | 228 | -
| - | G41695 |
| Z10508 | 21 | AGCAGATCACAGGCCTTTCC | 20 | AGATCTCCTGCTGCCAGTGT | 20 | 107 | - | 97 | 109
| - | G39802 |
| Z10567 | 21 | TCGGCCATACCGTATGTTTT | 20 | TACCGTTAGCCCACCTGAAC | 20 | 224 | 226 | 250 | -
| - | G39808 |
| Z10960 | 21 | TCCCCGCTGAGTCCTCTATA | 20 | AGTGTGCGAGGTGTGTCAAG | 20 | 166 | - | 170 | -
| - | G39849 |
| Z11113 | 21 | ATGGCTTCGAAAACGGTAAA | 20 | GATGCTGCAGACGGACAGA | 19 | 209 | - | 205 | 219
| - | G39870 |
| Z11343 | 21 | GATCTTTCAGCTTTGGCTGC | 20 | CAAACACTGAGCTTCCCTCC | 20 | 145 | - | 149 | -
| - | G39894 |
| Z11532 | 21 | ACGATGCTCCTGGATAATGC | 20 | TCCTATTCTGAGCATGTGCG | 20 | 207 | - | 226 | -
| - | G39926 |
| Z11574 | 21 | GGCTACACATGCAGTGATGC | 20 | AGTGATCAGGAGATGACCCG | 20 | 168 | - | 118 | 138
| - | G39932 |
| Z13419 | 21 | AGGTTTCAGAGCCCTCATCA | 20 | CATGTGAACTCTGAAGCCCA | 20 | 220 | 286 | 202 | -
| - | G41762 |
| Z13467 | 21 | CACAGCACCTATGCATTGCT | 20 | CAGACAGCAACCGAGTCTGA | 20 | 180 | - | 300 | -
| - | G39101 |
| Z13719 | 21 | TGTGTCCTGAATGGATCTGC | 20 | TGTCAGTGATTTTCCCACCA | 20 | 156 | - | 142 | 146
| - | G40065 |
| Z13764 | 21 | CCCCAGTGTGCGAGAGATAA | 20 | AGAGATCATCCTGGTGGACG | 20 | 184 | - | 194 | 336
| - | G40069 |
| Z15421 | 21 | AGGATGACATCACTCTGGGG | 20 | TCCCCTGGTGGCAGTAATTA | 20 | 259 | - | 249 | 263
| - | G40121 |
| Z15491 | 21 | AGATCGGCCCACTCACATAC | 20 | AAGGGCTGGTTGATTCACAC | 20 | 135 | - | 133 | -
| - | G40128 |
| Z20205 | 21 | ACGGCATCTCAGTGTGACAG | 20 | CACGCTACAGGAGCAAAACA | 20 | 172 | - | 150 | -
| - | G40163 |
| Z20446 | 21 | AGTGCCTGAGCACCACTCTT | 20 | TTTGTGAAAATGCTCACACTGA | 22 | 206 | 210 | 192 | -
| - | G40176 |
| Z20701 | 21 | GATCAGACGCTCTGCTGATG | 20 | CAGAGCCACAGGGAAATGAT | 20 | 106 | - | 122 | -
| - | G40194 |
| Z20812 | 21 | TGATCAGGTCCTGCTACCTG | 20 | TGGGACACAAATGGGATTTT | 20 | 296 | - | 338 | 250
| - | G41734 |
| Z21106 | 21 | GACACATTGCTCGGGCTATT | 20 | CCCCACAACAAAGAATACAATG | 22 | 283 | 295 | 361 | -
| - | G40223 |
| Z21718 | 21 | CGTATTTTTCCACGCGTTTT | 20 | CCCAGAACGAGTTCACAGAA | 20 | 204 | - | 214 | - | - | G40271 |
| Z22174 | 21 | TCGTGACTTAGCTGCTCTTCA | 21 | GGAGGGGTCAGATCAGATGA | 20 | 238 | - | 254 | 310 | - | G40297 |
| Z22852 | 21 | CGGTACTGGGCTGCTCTTAC | 20 | CCGTTCCTTCTGGCAAATAA | 20 | NA | NA | NA | NA | - | G39520 |
| GOF16 | 21 | AGTAGAAAAGGCTTGCAGCG | 20 | GAAACAAGTGGAGGAAATGAGG | 22 | 136* | NA | NA | NA | "Goff, et al., 1992" | none |
If you have questions, comments or problems contact us.Back to IndexTable generated Wed Oct 7 16:28:07 1998