Linkage Group 23 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z3077B 23 TTAGCATAAGCAGCAGCCCTG 21 AGCGTACAGCCGGGGTTAGA 20 NA NA NA NA Use at your own risk -
Z130 23 ACACGCTGGAGAGCCAAC 18 CCAGAACCCACCTGGGAC 18 NA NA NA NA - -
Z176 23 CTCCAGAACAGGTTAGACACACC 23 CTGAACACCTCGAACCTTTACC 22 NA NA NA NA - -
Z342 23 CATTGAGTTTAGACCCCCACA 21 TCACTTCTGCTTTATAAGGCACC 23 169 155 189 - - -
Z643 23 AGGCTGGGCTATAATGCTGA 20 TAACGAGTCTGTGTTTCGCG 20 NA NA NA NA - G41412
Z720 23 ACTCTCAACATGAAGTGCTTTCC 23 ACAGGGAATGAGCTGAGAACA 21 NA NA NA NA - G40516
Z1348 23 GGGTAGTCAATCTGTGCATCTC 22 CTCACTGGCCACGTCCTC 18 NA NA NA NA - G41355
Z1403 23 CGCAGGTATTTACAGCTCTGC 21 GATCTCTTTTTTCCATGAGTA 21 NA NA NA NA - G41364
Z1432 23 ATGGAGACGAGGAGCATCTTGG 22 CAAGGTGCTCAGTGGTGTCACA 22 248 - 240 440 Use at your own risk G41372
Z1487 23 CTACATCACAGGAAGCCAATG 21 TTACTCGTGTAGTTCACCCGC 21 NA NA NA NA - G40117
Z1498 23 ATGAATGGAAGTCTATGTAATGTCC 25 ATGCTGAGTCTGCGCTTCTGC 21 NA NA NA NA Use at your own risk G41384
Z1579 23 CTGCCTGCCTGCATATGTGC 20 GACCAGTGGACAGCAACCCC 20 NA NA NA NA - -
Z1665 23 AAAAGCCCAGAGCAGTTCTGG 21 GAAAGGATCATGGGTGCGTAG 21 NA NA NA NA - G40133
Z1668 23 TCAGAACGCTGAGTTTGACCC 21 CTGAGCCTCCAACAATGAAGG 21 NA NA NA NA - G41401
Z1773 23 CATGATGCTGCCCATCGTCG 20 ATTCCTCATGTGGCGACCAA 20 NA NA NA NA - -
Z3157 23 GAAGGGGTCCTGGATTTGTTCA 22 GACACAAGTCATTGGGCAGGG 21 113 127 109 - - -
Z3525 23 TTCTCTGCGGGGTGGTTTTC 20 TGCTTTTTCAGGATTGCAGCC 21 NA NA NA NA - -
Z3532 23 AGCCATATCGCACTGCTACTCG 22 CCTCCCTGAGCTCCCGAAAT 20 264 - 296 - - G41449
Z3680 23 CAGCTAGAAGGGCATCCTCTGC 22 TGGGGAAAAAAGGGAAACGG 20 156 - 168 188 - G40341
Z3712 23 TGCTGTTTCCCTGAGACAGTGG 22 AACACGAGATCGGCCTGTTTG 21 147 - 137 181 - G40342
Z3794 23 CTGAAGCAGATGGCCCAGAC 20 ACCCTCATTCACAATCCTGTGC 22 209 - 199 211 - G40346
Z3852 23 CATATGGGGCTCCATCTCATG 21 AAGCTAAAGCAGTGTGCGGTCC 22 155 - 145 149 - G40349
Z4003 23 AGCAGGGGGATTCCTGCATT 20 AAGTTGGCCAATATGGTCTGCG 22 225 247 197 - - G41476
Z4075 23 CTACCCGCACCACTGTGACG 20 CGCCATCGGTACATCCACAA 20 304 - 292 300 - -
Z4120 23 TACAGCTGCTGCGTGATGAGC 21 TCTGTAAGGAGTGCCTCAGGGC 22 139 145 141 143 - G41479
Z4421 23 TACTAATGGCCCAGGGCGAG 20 ACACCCTCCTTCACACCGGA 20 NA NA NA NA - G41516
Z4777 23 CCAGAGACCTGGGTTCTATCC 21 TTACATTCATGTCAGGGTCTGG 22 NA NA NA NA Use at your own risk G41538
Z5141 23 GGACAGTCTTGCCTGACAGCTG 22 CAAGTGCTGCCATCAGCATACA 22 NA NA NA NA - G41556
Z5160 23 AAGCGCTTTGAGTGCCCAGA 20 TTTCCTGACCCGCAGTCATATG 22 NA NA NA NA Use at your own risk G41557
Z5265 23 CTAACCACAGCTGCAACAACCG 22 AGTGTCCGTGCAATCAGAGGC 21 177 - 159 185 - G41569
Z5526 23 AGCTGCCAATCAAAGTCTGCG 21 CCCTTCACCTGCCATTTTGC 20 NA NA NA NA - G40393
Z5683 23 CGGATATTGGATTATCGGCTCA 22 AACGATCTGCATGTGCGAGC 20 NA NA NA NA - G41597
Z6017 23 ATAAGTTGGCCGGTTCATTG 20 GACTGAAACCAGCGACCTTC 20 241 - 253 283 - G41826
Z6142 23 GCAGAGAGAGGGGAAGGATT 20 CAAAATTAAGCAGCAATGATGA 22 136 150 132 152 - G40406
Z6376 23 TGGAAACCTATGTAATGTCCCC 22 TGAGGCCAAACAGCACTTC 19 151 - 105 131 - G41115
Z6742 23 GGAAACAGTTGTGGGCTGTT 20 TTGAGTGTGTATGGCATGCA 20 100 - 80 104 - -
Z6952 23 ACACGCTGGAGAGCCAAC 18 CTGAAGGCAGCCAGGTACTC 20 ? - ? ? - G41642
Z7243 23 TGACTCACCTGCTACAATCTGC 22 GAGTCTCCATTTCTGCTGCC 20 204 230 218 - - G40526
Z7550 23 CGATCCCTTCGTTTGTTGTT 20 TGCTCAAGTCTTTTCCTCCTG 21 108 172 98 124 - G40569
Z7590 23 CACTTTGAACTTCCTCCTCCC 21 ACGTGATCAAAAAGCAACTCTC 22 NA NA NA NA - G39670
Z7655 23 TATTCTGGGAAGCGCTGC 18 CATCTCCCTTTACTGCTTCTGC 22 221 - 197 233 - G41153
Z7890 23 TCACCGCCTTATTCTGTGAA 20 CGAGAAAAGGGTAAAAATGCC 21 198 - 204 214 - G40606
Z7973 23 GCACTTTCGTTTTGACAGCA 20 CAATTTTGCCCGAACTGTTT 20 245 - 243 249 - G41672
Z7984 23 TAGGTCAACGCAGAATGTGTG 21 AACTCGCCTTGCCTAAATACA 21 94 - 74 88 - G41160
Z8362 23 TGGCTGTAATGTGCGCATAT 20 GAGACCGCTGCTGGAGATAC 20 115 - 107 n - -
Z8784 23 CAATGCGCTTATTTCACACG 20 ATGCGGTTAAAAGGATTGCA 20 237 269 231 235 - G40689
Z8945 23 GCCCGCCTTTGTCCTATGT 19 ACAGTCTTGCCGAGGAAGAC 20 403 - 401 405 - G40707
Z9129 23 CCATTGCAAAACAGTTTCCC 20 ATGCTCAGTCTGCCTGTGTG 20 117 - 103 113 - G40735
Z9351 23 TCTGGTGAAATACTGCGCTG 20 CACACACCCTCCCTCAGTTT 20 240 - 234 - - G40772
Z9573 23 TCCAGCCAGTTTGATCTTCA 20 TGTGTGAAGAGGGCTCTGTG 20 ? ? ? ? - G40812
Z10061 23 TTTAGGGCAACCGATGAACT 20 TCATGCATCCGCTAACTCAC 20 226 234 222 224 - G39745
Z10161 23 TTAACCCAACGAGATACCGC 20 CGTTTTCTTGGGGCACTTAA 20 244 260 220 276 - G39756
Z10949 23 TGGAATCTGCTGCTGTGAAC 20 CGCAGTTCAACTCTGAAACA 20 99 109 89 95 - G39848
Z11020 23 TGCTAACAAACGTCACAGCA 20 GTGGTATTTCCACAAACGCC 20 218 - 152 178 - G39858
Z11391 23 ACTGAACCAACCCCGTACAA 20 TCAGTTGACAGGTTTGTCTCTGA 23 135 147 111 125 - G39905
Z11407 23 GCAGACTGGAGGAGTTCTGG 20 ATATAGAGGGTTGGAGGGGG 20 239 - 181 219 - G39908
Z11495 23 CTCCAAAAACACACCGGACT 20 CAGATGAACAGAGCCGACAA 20 287 - 235 n - G39920
Z11902 23 TTGATAGGTCAGTCAGGGCC 20 AGATCCACAGGTTACGCCTG 20 208 228 158 308 - G39971
Z13236 23 GACTTTTGCCAGAATTCAATCC 22 AAGCTACCTGTGCGCCAC 18 125 - 117 - - -
Z13363 23 CCTGTTTGTGTCTCCAGTGTG 21 CCTGTCACTGTTTTTCCTGAA 21 135 261 153 299 - G40014
Z13424 23 CATGGCAAACTGTGTGAAGG 20 CAAGCCAGGAAGAGAGGTTG 20 267 n 191 225 - G40021
Z13535 23 CAGACACACTTGGTGGGATG 20 AACCCAGGCCATTCATCTC 19 NA NA NA NA - G40034
Z13781 23 CAAATAATCCCCACTGGGTG 20 TATGGTCTGCGTTGTCTTGG 20 243 265 221 - - G40072
Z14008 23 CTTCAGCCGTGGAGAAAGAC 20 CTGAACATTCAAGCGTTCGA 20 ? ? ? ? - G40096
Z15422 23 TGAAAGTGGACATATCCAGCC 21 CGCTGTCCTTCTTTCCACTC 20 128 168 94 122 - G40122
Z20039 23 GGAGGGCATGTGTCCTAAAA 20 CAGGTCAGGTCATTCAAGCA 20 183 - 147 161 - G39215
Z20133 23 AGCTTCCGCAGAGACTTCAG 20 CTCCTGTTACAGCATGCCAA 20 ? ? ? ? - G41728
Z20492 23 ATGAACAGTGTGCGAGATGC 20 CTCGCAGACTTCAGATGCTG 20 159 - 119 137 - G41730
Z20643 23 GTCCAGAAGGATGGAGGACA 20 AAGTCTCCTTTGATCGCGC 19 293 - 291 - - G41732
Z20725 23 TGAAACACGAATCCAAAATCC 21 TGCGCTCCACTACAGCTTTA 20 249 277 247 279 - G40199
Z20895 23 CAACACAACCCACAGTCAGG 20 CCCACCCCCTACTCAAAAA 19 212 - 296 - - G40207
Z22095 23 CAGTGGCTTGCTTGTTTGAA 20 CTCCTCTTGTCCGTTTCAGC 20 213 - 211 - - G40290
Z22238 23 CCCATTGTCAACAGCATGAT 20 GTTTGCCGGTTTGTTGTTTT 20 206 208 204 - - G40301
Z22256 23 TTTGCGTCTCACAACAGGAG 20 AGGAGGGCGTCATAACACAC 20 228 240 236 296 - G40307
Linkage group 22LegendLinkage group 24

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Table generated Wed Oct 7 16:28:07 1998