Linkage Group 24 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z241 24 CAATTAAAGGTGCAGTGGAGC 21 TTGGCCTCTGCTGTTTCTCT 20 NA NA NA NA - -
Z249 24 TCTTCCCCTACAGGCACAGT 20 ATGATACGCAGTCAACGTATCG 22 147 149 141 151 - -
Z911 24 GCTGCTTGTGGTGTGAAAAA 20 TAATTTCATTCCACCTGCTGG 21 NA NA NA NA - G40729
Z1061 24 CATCGCTGGTTACTGCTGG 19 TCTCTATTATAAGCCTCCTCACCG 24 102 - 106 108 - G41846
Z1233 24 ATTTCTAGTGCATTTCTCAGTTTGG 25 CCCATACTGACACTGATGCG 20 NA NA NA NA - G41345
Z1243 24 CGTCAAGAGAGGACGACTAACC 22 AAACAGATTTATACCAAGTTTACCTGG 27 191 - 201 - - G39989
Z1584 24 ATAATGAACGTTTGGCGAGG 20 AAGGAAGTCTTTGTGAATTGACG 23 NA NA NA NA - -
Z3310 24 GCCCCCTTTGTTGATTCATTC 21 CAGCCCACTGAAACTCGCAA 20 104 - 144 150 - -
Z3314 24 ACACGCTCATTTCCCCCAAA 20 ACACCCGAACCCTCCCAAAG 20 NA NA NA NA - G41441
Z3399 24 CTCCTAGGGTGCTCCGCCTT 20 ACAGCAGATGCCCTTCCAGC 20 NA NA NA NA - G41444
Z3901 24 GTCCAATCCCTCAAATCCCTCC 22 TTGAACCTGCAGTGTGAAGCG 21 NA NA NA NA - G41471
Z4437 24 CGCCCACAACGCCATAGAAA 20 TGTCCCGGTAAAAGTGAAGGTG 22 NA NA NA NA - G40364
Z5075 24 TGTGTTGTCTGATATGCCCACA 22 TGCAAAAAGCCTCTAAGTGCCG 22 216 234 198 222 - G41552
Z5413 24 TTGATGATCCCACAATGCGG 20 GGGATGTTTGCCAGCTGCTT 20 NA NA NA NA - G41576
Z5478 24 GGTTTATTCGGCTGTGGTGACC 22 GATTGGTTCACAGACGCAGACG 22 NA NA NA NA - G40390
Z5624 24 GACAGCAGCTCCAGATCCAGTG 22 GCGCTGTCAGGACTGTGAGC 20 n - 172 - - G41851
Z5657 24 GCCATCATGGAGTCCAACCC 20 TCCTCGTAAACCACCAAAACCA 22 NA NA NA NA - G41595
Z6020 24 ACTGCAGATCTTTGAACTCGG 21 AAACAAAAATTGCTGAAGGGG 21 190 - 186 202 - G41827
Z6188 24 AACCCATTACTGGGAAACACC 21 GAAACATCTGAACGCTGCAA 20 170 - 188 204 - G41828
Z6239 24 CCCTCTGATTATGTTACCACCC 22 GAATCAACCAAAAGGAAAGAGC 22 291 - 185 233 - G40408
Z6296 24 ACCCTGCAGCTGTGATCTG 19 GCAACACCGTAGCAACACC 19 298 - 258 - - G40419
Z6438 24 ACGGAACCCAGATCAACAAG 20 TCTGATGTTTGGCGTAGCAG 20 146 152 142 144 - G40439
Z6451 24 CTCAGGGACTAGATGAGGCG 20 TACTCGTTTGCTTGGGCAG 19 232 - 212 210 - G40441
Z6923 24 TACCCACTGAGCCACCGT 18 CTGCATTGGCCCTGAAAC 18 ? - ? ? - G41626
Z7132 24 TGTGTTTTCCCTCTGCTCTTC 21 GTTTTGCATTTTTGCCCTGT 20 NA NA NA NA - G39641
Z7234 24 TCCCAGAACAGAAGTCTGCA 20 TATCTCGGTGTTCCTCAGGC 20 162 182 144 186 - G40524
Z7273 24 GTCGTCTGTTCTGCAGTGGA 20 GCAGCCTCTTCAGGTCAGAG 20 163 195 181 - - G40532
Z7292 24 GGAGTGTGTGGCATTAGCAG 20 TGAATGAATGAATGTTCATGTTTG 24 113 - 103 121 - G40535
Z7324 24 AGTTTGAAATGGTGCAAGGC 20 GACGGACACGTGTTTCCTCT 20 142 146 132 148 - G41148
Z7349 24 GGTTCGCTCTGCAGCAAC 18 CGCACACTGGAGGCTGAT 18 166 184 156 180 - G40545
Z7627 24 TCCTGTTTCTCACTCGGGTT 20 GCAGGAACACCAGAGTCACA 20 238 ? 242 274 - G40581
Z7823 24 AAGAGGCAAATGTTTGTCGA 20 CGGTTATCGGTATCGGCTAA 20 170 - 168 182 - G40597
Z7895 24 GCAGTCTGTGGTTCCTGTGA 20 TCAGAATGTTTGATCTGCGC 20 256 264 320 n - G40607
Z7967 24 AAAGCAAACTGTGACAGCGA 20 TAGGTGTGTCCCAAACTGCA 20 260 - 238 276 - G40618
Z8130 24 TTCAAAGGTTCTGAATCCGG 20 TCAGAAGCATGGTTCATGGT 20 NA NA NA NA - G39711
Z8209 24 ATGCTGCGCCTTCCTGAG 18 AATCAGTGTTTCCCAAAGCG 20 208 - 204 210 - G41681
Z8221 24 GGACACAGAGGTGGGACATT 20 GGCGTTAGTTTGATCAGTTGC 21 108 - 104 106 - G40634
Z8259 24 AGCCTTCAGAATATGCCATAGC 22 CAAGAAAGAGGGGGATACACA 21 NA NA NA NA - G39720
Z8314 24 GGGTTTGGGACACCTCTTTT 20 GTTACCCTCCCGTATCAGCA 20 180 - 184 190 - G40640
Z8327 24 AAGTGCAGACGTCAGTGCTG 20 TCTGCACGACAGTTACACACTG 22 NA NA NA NA - G39722
Z8382 24 ATGATGACAGTACTGCCTGTGG 22 GATCTTACAGGTGGACCTCTGG 22 190 206 222 242 - G41829
Z8456 24 GGGCACCTGATGCTTCTTAC 20 TTGGATGAACTGATTGATGGA 21 189 - 179 - - G40651
Z8602 24 CTGTTTTCTGCTCCACTTTCG 21 ATGATGAGCGGAGGAAAATG 20 176 - 154 192 - G40669
Z8969 24 GTTTGAACCCTCGTCCAAGA 20 GAGCTTAGCAGTGTCTCGGG 20 237 - 269 281 - G40710
Z9127 24 TGCTCCGATCACTTGCACT 19 GCGTTTCCTGTGATGGTTG 19 267 - 251 - - G40734
Z9321 24 GCAATTGTGGCTCAAGTTGA 20 CACGCTGATCTGCTGAAGTC 20 208 - 216 224 - G40766
Z9325 24 TCCAGAACCAGAGCTTTAGTCC 22 GCAAGGTGAGAAGATGCACA 20 217 - 219 229 - G40768
Z9380 24 TTTGCATGTCTGTGAGAGGC 20 AGCGAGAGCATGTGCGTG 18 260 - 248 252 - G41639
Z9387 24 TCAGGAGCTCAAGGGCAC 18 GATCCTTCAGTGTCCCCTCA 20 167 201 195 201 - G40784
Z9603 24 AGCAGACCAGCATTTCTGTG 20 GCTGGTTTATGGTGGTTCGT 20 294 340 290 360 - G40817
Z9673 24 TCTTCTTTAAAGTGCTGCTCCA 22 ACCAGCGCTGTCTCAACC 18 83 95 81 93 - G40822
Z9851 24 ATCAGCAGCGGGTTACTCAT 20 GCAGAGCTTCCAGGTCAGAT 20 287 381 279 361 - G40848
Z9852 24 ACAGCTCTTCTCCAGCAGGA 20 GTGCCTTCCAATAAAGCCAA 20 231 267 217 219 - G41661
Z10257 24 GCAAACCCCTATGACAGAGC 20 GAGTGAGTTTGGGGGTGAAA 20 229 - 189 203 - G39770
Z10372 24 TGCCTCACCATTACACTCTCTC 22 AGGGTTCAGGTTAACCAGGG 20 131 139 137 147 - G39788
Z10440 24 GCGCTGTGTACATCAGCAGT 20 GAGCAGAATGAGCGGATCTC 20 184 - 198 224 - G39793
Z10458 24 GAGATGCATTCCAGCACTGA 20 AAGAGCAGCCCAGATGTCAT 20 211 213 209 237 - G39797
Z10529 24 GGGAAATGACACGTAAAATGC 21 TGGTTATTGTGCTCTCAGGTG 21 175 - 207 211 - G39805
Z10961 24 AACCCCATCCAGACCTCTCT 20 GTGACACGGGTCAGAAGGTT 20 128 140 134 136 - G39850
Z11862 24 TCAGACATAAGCATGAGCGG 20 GAGGTGTGTGTTCAGCTCGA 20 174 - 182 188 - G39965
Z13229 24 GAATAAAAGTGGCATGCTTGC 21 CAGCCCGTCTCAAACATACA 20 - - - - - G41830
Z13695 24 TGTCGTAGGACATGGGGATT 20 TCGCTGCTTCGTTCTCACTA 20 133 - 123 131 - G40062
Z14086 24 AACACATCAGCACCTCCCTC 20 AAATTTCTGCCCCACAACAG 20 ? - ? ? - G40109
Z17203 24 ACAGAAGACTCCTGTTTTTGGC 22 TTGGGTAGCTAAATTGTGTGTG 22 260 274 248 258 - -
Z20051 24 GCCCACTGCATATGTGTGTC 20 AAAAATCAGCGAAAATTCTCATT 23 171 ? 135 143 - G40151
Z20415 24 TGACAAAAACAACTGAACCCTC 22 TCAAGCCATTCCATACTCCC 20 175 - 137 167 - G40173
Z20775 24 CGAGAGGCATGTCAGATCAG 20 AGCCGGTCTGTGCTTTTAAA 20 133 - 117 165 - G40202
Z21011 24 CGGAGGATGGGGTAAATTTT 20 CCCCACAGATCCAAGCTTTA 20 202 - 190 206 - G40216
Z21906 24 ACACCAGACATGAAGGCCTC 20 AGAGCCATAACCGGATGATG 20 138 142 82 122 - G40276
Z21908 24 ATTGATTAGGTCATTGCCCG 20 AGGAGTCATCGCTGGTGAGT 20 149 - 145 - - G40277
Z22252 24 TCTGGTCCTGCCTCTCTCAT 20 GCGGGAGGCATTTATTACAA 20 232 - 236 - - G40305
Z22375 24 ATGTGGAAGCGATTAGCACC 20 AAGCTGCCTTCACTTCCTCA 20 296 300 216 270 - G40316
Z22927 24 CGATCTGTTGACTTCCTGCA 20 AAGGCATCTTTGACAGGTGG 20 NA NA NA NA - G39527
Z23011 24 TTGGGGAAAAAGTCTGCTTG 20 TCCAACATGTAAAAACCTGACAA 23 NA NA NA NA - G39537
Z23038 24 TTCAGCTGGTGTTTGAGGTG 20 TTTTCAAAGCAAATGCAGGA 20 NA NA NA NA - G39540
Linkage group 23LegendLinkage group 25

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Table generated Wed Oct 7 16:28:07 1998