Linkage Group 25 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number Linkage Group Forward (+) Primer Sequence Length Reverse (-) Primer Sequence Length AB_1 Size AB_2 Size In_1 Size In_2 Size Comments dbSTS Accession
Z1197B 25 AGTGTGTAGTCCTGCTGCGGG 21 ATCCTAGCTGGTAAGGCAGGGC 22 NA NA NA NA - none
Z1799A 25 AGCGCTCCTCCGTCTGCTGT 20 TCCGCGTCCATCACTGCGGG 21 NA NA NA NA Use at your own risk -
Z49 25 GATTATCCTCATAAGTACGGGCC 23 AGCACATCTTCATCCTGCG 19 NA NA NA NA - -
Z233 25 CAGTTTTCGGGACCTCTGAG 20 TGGATGAAGTTTACGGAGCC 20 NA NA NA NA - -
Z464 25 ACCTCCACACGGAAAGGAG 19 GGTGATGAAAAATTAGCCTTCG 22 NA NA NA NA - G40367
Z787 25 GCTGCGTGATATTCATGGG 19 CTGTATCCTGCTATACAGCCCC 22 125 - 111 - - G40603
Z975 25 ACCTGTGTCATACCCATGTCA 21 CTGGTGTCCCCCACAGTC 18 NA NA NA NA - G41431
Z1213 25 CAGAAATGATGAAGCGTAAATAATG 25 ACCACCTCGCCCAGAGTAC 19 127 - 117 - - G41342
Z1378 25 TGGAGGAATGAGGACAGCAGG 21 ACCGTGTTGACAATCGATCAGC 22 NA NA NA NA - G41358
Z1431 25 TTCTCCACATCCTGCTGAGC 20 GTGGTGAACGGCTCCTCTGG 20 137 - 149 - - G41371
Z1462 25 TGGGCTGTTGGGTCGTTTTC 20 GACGTTCTGCTCCGACAGCA 20 NA NA NA NA - G41379
Z1477 25 CGGCTTCCAGGAACACCTTT 20 TCGTACACATTTACTACAGAAG 22 NA NA NA NA - G41381
Z1671 25 CGCTGGCAAACCATGACATC 20 AAGGATCATGTGAAGCTGCCG 21 138 154 124 128 - G41402
Z1772 25 GCGCAGGTCATCGCTACACT 20 ATTCATGTTGAACGCCGGAT 20 NA NA NA NA - -
Z1984 25 CTGCACAAACAGGGTTGCGT 20 CTGCATTGCATCATGGTCTCC 21 NA NA NA NA - G41435
Z3065 25 GGTTGCAGCTGGTTGCACTG 20 CCATCAAAACTGCTGTGCATCA 22 NA NA NA NA - -
Z3208 25 CAGTTCTTACTCACCCGGGCA 21 TCACGGCCGTCTCTCATTCA 20 238 - 202 274 - -
Z3376 25 TGGCCTCCGTTACATTTGCA 20 AAATCCAGGCTCAAACAGGTCG 22 NA NA NA NA Use at your own risk -
Z3405 25 TCAAAATGTACACCCACAGCGG 22 CCTGCGAGTTCGCTGGAATT 20 NA NA NA NA - -
Z3490 25 TCTAGTCGGTCCTGAGGCGC 20 GCAGGAAACATTGCATGACTCA 22 141 - 165 - - -
Z3528 25 GCCAGAGGCTGATTGATAAACC 22 ATGTGGCGCTAAGCACTTTTCC 22 150 - 166 - - G40337
Z3632 25 GCCACACTGAAATGGTCTGTGC 22 GGGGATGGTGGGCAAAGAGT 20 203 209 201 - - G41456
Z3745 25 AGAAGACGGTTCCCCATCGC 20 AGTAACTGACTTGCTGCCGCG 21 121 141 137 - - -
Z3815 25 TCATACCAACTGGTCAGCCTGG 22 TCGTGGGGCTCTATTTCCTTG 21 NA NA NA NA - G40348
Z4198 25 GGACATCCGCTATATGGGTGAC 22 TGGATGCCCTTTCAACTGCA 20 NA NA NA NA - G41486
Z4294 25 GGCCTGTAGAGCAGCAGAAAGC 22 TCTGCTGTGGAGAATCAGCTGC 22 NA NA NA NA - G41498
Z4358 25 AAAGCAGTGTAGTCCTGG 18 AAATGCTAAATCGTCTATGT 20 NA NA NA NA - G41510
Z4567 25 CCCAAACAGCGGCACCTTAG 20 ATCCCAGTCCCTTGTAACGGTG 22 235 - 243 273 Use at your own risk G41522
Z4693 25 CAGCGCTTGATTCTGCCTCA 20 TCTGCATGCTAACCGAGGAGC 21 NA NA NA NA - G40370
Z5030 25 CAGGCTTTTGTCTGCAAACTGC 22 GCCTACATCTGCCCAAAAATCC 22 117 - 119 - - G41550
Z5073 25 TGCAGTGAACCCCACAGAGC 20 GATGTCATGCACCCCAGTGG 20 NA NA NA NA - G40381
Z5229 25 TCCCGCTATTCTCAATCATCCA 22 GCGTTGTTAACCTGCACCTTTT 22 NA NA NA NA Use at your own risk G41567
Z5659 25 CAATCGAATCACAGCTCTTGGG 22 CGTTTCCTGAACACTCTGCAGC 22 NA NA NA NA - G40396
Z5669 25 TGTTGATCATCAGTTGCAGTGC 22 GCCTCTGCAAACAAGTTTCCG 21 215 229 217 233 - G41596
Z6332 25 ACTCTGTTTGGTTAACGGGA 20 TGCAAACAACTACAAATCTCCA 22 290 310 278 - - G41112
Z6874 25 TGAGGTGCTGCAGGTGTTAG 20 ATCCAGACCTCATCTGTCAATC 22 ? ? ? ? - G40480
Z6924 25 ATATTTCAGGCTTCGCATGG 20 GGAGAACGCCAAGAAAAACA 20 ? - ? ? - G40484
Z7233 25 TCATCATTTATGCTGAGCACTG 22 GACATCCAAACGGGATGAAC 20 230 - 238 - - G41142
Z7306 25 TGCAGGTAAAAGCAAACCAA 20 AATCCCTGCTGAATCCTCAG 20 170 - 228 - - G40538
Z8224 25 GGCACAAACTTTCTTGGTATCA 22 GACACCTTCCCACTATGTACCC 22 103 149 131 - - G40635
Z8238 25 ATCAACTTCAGGCAAATGGC 20 TGATGGTCCAACCTCACAAA 20 150 - 148 - - G41685
Z8380 25 GATGCCTCCATTAAAGAGCG 20 GCCGATGACAGCATGAGTTA 20 124 - 112 - - G41831
Z8727 25 ATCCCTGTTTAGGGTCCCAC 20 GATGACGGCATGTACACAGG 20 260 296 188 194 - G40682
Z8780 25 TCAGGGTCTCCATGTGTGAA 20 CTGTGTGTTCATCCCACTGG 20 85 - 81 109 - G40688
Z9041 25 TGTTCAGCTCTCACTGGCC 19 AGTGTCCGTCAAACATGAAGG 21 NA NA NA NA - G41169
Z9044 25 GCTCCATAACCAACATGCCT 20 GGTGTCAATACCCCGCAG 18 118 - 98 112 - G40717
Z9290 25 GGCGGACAGCACAAGAGT 18 CTCTTGTGGTCCAGAACTGTTG 22 156 186 190 - - G40764
Z9352 25 TCATCACTTTTGTCAAGCGC 20 CTCCAGTGTTCCTCTGAGGG 20 213 219 205 215 - G40773
Z10010 25 GCAGGATTTTTACAAGGTGACC 22 TAGGAGTAATGGAGAATGCTGC 22 244 252 244 - - G39739
Z10492 25 CAGTTTTCCCTCCTCTGCTG 20 GGTCCAGGGTTACGTGGAT 19 220 - 230 - - G41698
Z10578 25 GGCGACATCAGAATGGAGAT 20 GCAGAGACACTGAGGGCTTC 20 143 153 131 133 - G39809
Z11083 25 CGCTTATGATGAGAGCAGCA 20 AAGCCCTGATGTGTGGAAAC 20 283 319 309 339 - G39867
Z11092 25 AGCATCAGCCAGACACTCCT 20 GAACACCAGGATCGCTCCTA 20 145 175 137 - - G39869
Z11786 25 CAGCACAACCACCACAAAAC 20 CATTGACGGACACCTTGATG 20 137 - 113 127 - G39958
Z11858 25 GTTCCACTCCACACAGCAGA 20 AACACAGAGAGTGCGCTGAA 20 124 128 134 - - G39963
Z13232 25 GCTGCGTGATATTCATGGG 19 CTGTATCCTGCTATACAGCCCC 22 111 - 103 - - G41832
Z13578 25 TGGAGGTCAAATTCACTCAGG 21 TCAGTTCTTACTCACCCGGG 20 139 - 119 153 - G40040
Z13622 25 CCTCTATGAGGATCAAGCCG 20 CCTGTCTGGGGCAACAGA 18 - G39128
Z15401 25 GAAATAGCAAGCTGCAGAAACA 22 AGGGTCATTTGAAGACATCCC 21 - - - - - G41833
Z15480 25 AACCCATCTATTCTGTTGGTCG 22 ATGATGAAGGTGTCGCTCG 19 150 - 162 - - G40127
Z20048 25 ATGTGCACATACAGGTCCGA 20 TGATTTGTGTGTTTCGGATCA 21 197 - 199 - - G40150
Z20832 25 ACGAGAGCTGGAGGATGAAA 20 GAATGCTAGGATATGGTGCGA 21 221 - 299 221 - G40204
Z21055 25 TGCATCATAACAGCACCCAT 20 CTGGAAGATTGTGTGGCTCA 20 147 - 139 143 - G41737
Z21181 25 CCTACAATCACCTCCATCACC 21 TGGAGGAGACTGCATGAGTG 20 231 243 215 235 - G40232
Z21302 25 GATTCCCATGGCAAACATTC 20 TCCTCATCCTCACAGCCTCT 20 159 n 161 165 - G40238
Z21722 25 TGTGACCACACAGAGTGGGT 20 AGGCCACATATCTGAAACGG 20 NA NA NA NA - G39393
Z21929 25 CATGACGAAGGTGATGATGC 20 TGACCACACTGGACATGAGAA 21 181 - 117 183 - G39419
Z22028 25 AAAAGCCCTGCAAGACAAGA 20 GTGCTGACAGAGCAAATGGA 20 247 261 247 277 - G40282
Z22245 25 CAACAAGGTTTCACCCAACC 20 CAATGGACTCGCTATCTGCA 20 225 241 219 239 - G40303
Z22653 25 TCGTTTGTGGATCTTGACGA 20 GACGAGGCCTGATGAAAGAG 20 NA NA NA NA - G39504
GOF1 25 AAGAGAGCAGTTCAGGATTTGC 22 CTGTAACGCTGTACCTCAGGC 21 121* NA NA NA "Goff, et al., 1992" none
GOF15 25 ACATGTTCAGAGACGCCAGA 20 ATTCTGAAACCTGAGGCCCT 20 116* NA NA NA "Goff, et al., 1992" -
Linkage group 24Legend

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Table generated Wed Oct 7 16:28:07 1998